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Aliases for C11orf86 Gene

Aliases for C11orf86 Gene

  • Chromosome 11 Open Reading Frame 86 2 3

External Ids for C11orf86 Gene

Previous GeneCards Identifiers for C11orf86 Gene

  • GC11P066504
  • GC11P066742
  • GC11P063070

Summaries for C11orf86 Gene

GeneCards Summary for C11orf86 Gene

C11orf86 (Chromosome 11 Open Reading Frame 86) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf86 Gene

Genomics for C11orf86 Gene

Regulatory Elements for C11orf86 Gene

Genomic Location for C11orf86 Gene

Start:
66,975,277 bp from pter
End:
66,977,008 bp from pter
Size:
1,732 bases
Orientation:
Plus strand

Genomic View for C11orf86 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf86 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf86 Gene

Proteins for C11orf86 Gene

  • Protein details for C11orf86 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NJI1-CK086_HUMAN
    Recommended name:
    Uncharacterized protein C11orf86
    Protein Accession:
    A6NJI1
    Secondary Accessions:

    Protein attributes for C11orf86 Gene

    Size:
    115 amino acids
    Molecular mass:
    13172 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf86 Gene

Proteomics data for C11orf86 Gene at MOPED

Post-translational modifications for C11orf86 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf86 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf86 Gene

Domains for C11orf86 Gene

Protein Domains for C11orf86 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf86: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf86 Gene

Function for C11orf86 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C11orf86 Gene

Localization for C11orf86 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf86 Gene COMPARTMENTS Subcellular localization image for C11orf86 gene
Compartment Confidence
nucleus 3
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf86 Gene

Pathways for C11orf86 Gene

SuperPathways for C11orf86 Gene

No Data Available

Interacting Proteins for C11orf86 Gene

Gene Ontology (GO) - Biological Process for C11orf86 Gene

None

No data available for Pathways by source for C11orf86 Gene

Transcripts for C11orf86 Gene

mRNA/cDNA for C11orf86 Gene

(9) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C11orf86 Gene

Chromosome 11 open reading frame 86:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C11orf86

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C11orf86

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf86 Gene

ExUns: 1a · 1b ^ 2a · 2b
SP1:
SP2:

Relevant External Links for C11orf86 Gene

GeneLoc Exon Structure for
C11orf86
ECgene alternative splicing isoforms for
C11orf86

Expression for C11orf86 Gene

mRNA expression in normal human tissues for C11orf86 Gene

mRNA differential expression in normal tissues according to GTEx for C11orf86 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (33.8) and Colon - Transverse (12.3).

SOURCE GeneReport for Unigene cluster for C11orf86 Gene Hs.232604

genes like me logo Genes that share expressions with C11orf86: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C11orf86 Gene

Orthologs for C11orf86 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C11orf86 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf86 35
  • 100 (n)
  • 100 (a)
C11orf86 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C29H11orf86 35
  • 81.12 (n)
  • 76.11 (a)
C29H11orf86 36
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C11ORF86 36
  • 65 (a)
OneToOne
C18H11orf86 35
  • 79.94 (n)
  • 69.91 (a)
mouse
(Mus musculus)
Mammalia 2010003K11Rik 35
  • 80.12 (n)
  • 72.81 (a)
2010003K11Rik 16
2010003K11Rik 36
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C11orf86 36
  • 53 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC689065 35
  • 78.95 (n)
  • 75.44 (a)
Species with no ortholog for C11orf86:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf86 Gene

ENSEMBL:
Gene Tree for C11orf86 (if available)
TreeFam:
Gene Tree for C11orf86 (if available)

Paralogs for C11orf86 Gene

No data available for Paralogs for C11orf86 Gene

Variants for C11orf86 Gene

Sequence variations from dbSNP and Humsavar for C11orf86 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs4930187 -- 66,976,648(+) CAGAC(C/T)CATGG utr-variant-3-prime
rs11823659 -- 66,973,831(+) ttttt(A/G)tattt upstream-variant-2KB
rs12419809 -- 66,976,109(+) TCGTG(G/T)CTATG intron-variant
rs12576015 -- 66,975,097(+) gggGA(A/G)GGGGG upstream-variant-2KB
rs34313311 -- 66,974,594(+) TGCAG(-/A)TGGCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C11orf86 Gene

Variant ID Type Subtype PubMed ID
nsv897794 CNV Loss 21882294
nsv832194 CNV Gain+Loss 17160897

Relevant External Links for C11orf86 Gene

HapMap Linkage Disequilibrium report
C11orf86

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf86 Gene

Disorders for C11orf86 Gene

No disorders were found for C11orf86 Gene.

No data available for UniProtKB/Swiss-Prot for C11orf86 Gene

Publications for C11orf86 Gene

  1. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for C11orf86 Gene

Sources for C11orf86 Gene

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