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Aliases for C11orf85 Gene

Aliases for C11orf85 Gene

  • Chromosome 11 Open Reading Frame 85 2 3

External Ids for C11orf85 Gene

Previous GeneCards Identifiers for C11orf85 Gene

  • GC11M064463
  • GC11M064705
  • GC11M061032

Summaries for C11orf85 Gene

GeneCards Summary for C11orf85 Gene

C11orf85 (Chromosome 11 Open Reading Frame 85) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf85 Gene

Genomics for C11orf85 Gene

Regulatory Elements for C11orf85 Gene

Genomic Location for C11orf85 Gene

Start:
64,937,517 bp from pter
End:
64,972,093 bp from pter
Size:
34,577 bases
Orientation:
Minus strand

Genomic View for C11orf85 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf85 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf85 Gene

Proteins for C11orf85 Gene

  • Protein details for C11orf85 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3KP22-CK085_HUMAN
    Recommended name:
    Uncharacterized protein C11orf85
    Protein Accession:
    Q3KP22
    Secondary Accessions:
    • B3KS99

    Protein attributes for C11orf85 Gene

    Size:
    216 amino acids
    Molecular mass:
    24809 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C11orf85 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C11orf85 Gene

Proteomics data for C11orf85 Gene at MOPED

Post-translational modifications for C11orf85 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf85 Gene

No data available for DME Specific Peptides for C11orf85 Gene

Domains for C11orf85 Gene

Protein Domains for C11orf85 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C11orf85 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf85: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C11orf85 Gene

Function for C11orf85 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C11orf85 Gene

Localization for C11orf85 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf85 Gene COMPARTMENTS Subcellular localization image for C11orf85 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf85 Gene

Pathways for C11orf85 Gene

SuperPathways for C11orf85 Gene

No Data Available

Interacting Proteins for C11orf85 Gene

Gene Ontology (GO) - Biological Process for C11orf85 Gene

None

No data available for Pathways by source for C11orf85 Gene

Transcripts for C11orf85 Gene

Unigene Clusters for C11orf85 Gene

Chromosome 11 open reading frame 85:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf85 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1:
SP2: - - - - -
SP3:

Relevant External Links for C11orf85 Gene

GeneLoc Exon Structure for
C11orf85
ECgene alternative splicing isoforms for
C11orf85

Expression for C11orf85 Gene

mRNA expression in normal human tissues for C11orf85 Gene

mRNA differential expression in normal tissues according to GTEx for C11orf85 Gene

This gene is overexpressed in Testis (40.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C11orf85 Gene

SOURCE GeneReport for Unigene cluster for C11orf85 Gene Hs.567793

genes like me logo Genes that share expressions with C11orf85: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C11orf85 Gene

Orthologs for C11orf85 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C11orf85 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11orf85 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C11orf85 36
  • 54 (a)
OneToOne
C29H11orf85 35
  • 83.33 (n)
  • 80.59 (a)
dog
(Canis familiaris)
Mammalia C11orf85 36
  • 76 (a)
OneToOne
C18H11orf85 35
  • 86.86 (n)
  • 82.94 (a)
mouse
(Mus musculus)
Mammalia 1700123I01Rik 35
  • 75 (n)
  • 65.38 (a)
1700123I01Rik 16
1700123I01Rik 36
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C11orf85 36
  • 63 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499306 35
  • 81.59 (n)
  • 75 (a)
Species with no ortholog for C11orf85:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf85 Gene

ENSEMBL:
Gene Tree for C11orf85 (if available)
TreeFam:
Gene Tree for C11orf85 (if available)

Paralogs for C11orf85 Gene

No data available for Paralogs for C11orf85 Gene

Variants for C11orf85 Gene

Sequence variations from dbSNP and Humsavar for C11orf85 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs183578 -- 64,961,114(-) CAGCA(A/G)TGTAA intron-variant
rs183579 -- 64,964,185(-) AGGGA(C/G)ATCAC intron-variant
rs240565 -- 64,963,577(-) TACAG(G/T)CGTGA intron-variant
rs240566 -- 64,962,905(-) GGGTG(A/G)TCTGC intron-variant
rs240567 -- 64,962,213(-) GTACA(A/G)CACAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf85 Gene

Variant ID Type Subtype PubMed ID
dgv1173n71 CNV Loss 21882294
nsv526181 CNV Gain 19592680

Relevant External Links for C11orf85 Gene

HapMap Linkage Disequilibrium report
C11orf85

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf85 Gene

Disorders for C11orf85 Gene

No disorders were found for C11orf85 Gene.

No data available for UniProtKB/Swiss-Prot for C11orf85 Gene

Publications for C11orf85 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C11orf85 Gene

  • antibodies-online proteins for C11orf85
  • antibodies-online antibodies for C11orf85
  • antibodies-online kits for C11orf85

Sources for C11orf85 Gene

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