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Aliases for C11orf71 Gene

Aliases for C11orf71 Gene

  • Chromosome 11 Open Reading Frame 71 2 3 5
  • Up-Regulated In Lung Cancer 7 3
  • URLC7 3

External Ids for C11orf71 Gene

Previous GeneCards Identifiers for C11orf71 Gene

  • GC11M113767
  • GC11M114262
  • GC11M110190

Summaries for C11orf71 Gene

GeneCards Summary for C11orf71 Gene

C11orf71 (Chromosome 11 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf71 Gene

Genomics for C11orf71 Gene

Regulatory Elements for C11orf71 Gene

Enhancers for C11orf71 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C11orf71 on UCSC Golden Path with GeneCards custom track

Promoters for C11orf71 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C11orf71 on UCSC Golden Path with GeneCards custom track

Genomic Location for C11orf71 Gene

114,391,443 bp from pter
114,400,550 bp from pter
9,108 bases
Minus strand

Genomic View for C11orf71 Gene

Genes around C11orf71 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf71 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf71 Gene

Proteins for C11orf71 Gene

  • Protein details for C11orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C11orf71
    Protein Accession:
    Secondary Accessions:
    • Q6IAD3
    • Q9NXX1

    Protein attributes for C11orf71 Gene

    123 amino acids
    Molecular mass:
    13249 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C11orf71 Gene


neXtProt entry for C11orf71 Gene

Proteomics data for C11orf71 Gene at MOPED

Post-translational modifications for C11orf71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf71 Gene

Domains & Families for C11orf71 Gene

Protein Domains for C11orf71 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf71: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf71 Gene

Function for C11orf71 Gene

genes like me logo Genes that share phenotypes with C11orf71: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C11orf71 Gene

Localization for C11orf71 Gene

Subcellular locations from

Jensen Localization Image for C11orf71 Gene COMPARTMENTS Subcellular localization image for C11orf71 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf71 Gene

Pathways & Interactions for C11orf71 Gene

SuperPathways for C11orf71 Gene

No Data Available

Interacting Proteins for C11orf71 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
Selected Interacting proteins: ENSP00000325508 for C11orf71 Gene via STRING

Gene Ontology (GO) - Biological Process for C11orf71 Gene


No data available for Pathways by source and SIGNOR curated interactions for C11orf71 Gene

Drugs & Compounds for C11orf71 Gene

No Compound Related Data Available

Transcripts for C11orf71 Gene

mRNA/cDNA for C11orf71 Gene

Unigene Clusters for C11orf71 Gene

Chromosome 11 open reading frame 71:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf71 Gene

No ASD Table

Relevant External Links for C11orf71 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C11orf71 Gene

mRNA expression in normal human tissues for C11orf71 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for C11orf71 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C11orf71 Gene

SOURCE GeneReport for Unigene cluster for C11orf71 Gene Hs.715083

genes like me logo Genes that share expression patterns with C11orf71: view

Protein tissue co-expression partners for C11orf71 Gene

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C11orf71 Gene

Orthologs for C11orf71 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C11orf71 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C15H11orf71 35
  • 79.24 (n)
  • 73.68 (a)
C15H11orf71 36
  • 64 (a)
(Mus musculus)
Mammalia Gm5617 35
  • 75.22 (n)
  • 67.26 (a)
Gm5617 16
Gm5617 36
  • 65 (a)
(Pan troglodytes)
Mammalia C11H11orf71 35
  • 99.09 (n)
  • 98.64 (a)
C11orf71 36
  • 99 (a)
(Rattus norvegicus)
Mammalia RGD1563941 35
  • 75.52 (n)
  • 66.37 (a)
(Canis familiaris)
Mammalia C11orf71 36
  • 59 (a)
Species with no ortholog for C11orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf71 Gene

Gene Tree for C11orf71 (if available)
Gene Tree for C11orf71 (if available)

Paralogs for C11orf71 Gene

No data available for Paralogs for C11orf71 Gene

Variants for C11orf71 Gene

Sequence variations from dbSNP and Humsavar for C11orf71 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs536442 -- 114,393,297(+) tacaa(A/G)ctcaa intron-variant
rs2155805 -- 114,392,165(-) TCAGC(C/T)TCCCA intron-variant
rs7118216 -- 114,394,292(+) ctctt(A/C)ttttc intron-variant
rs61412725 -- 114,398,424(+) TTTAT(-/TTTAT)CTCCT intron-variant, downstream-variant-500B
rs112117712 -- 114,391,685(+) ATGGA(C/T)GAGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf71 Gene

Variant ID Type Subtype PubMed ID
nsv898396 CNV Gain 21882294

Variation tolerance for C11orf71 Gene

Residual Variation Intolerance Score: 75.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.38; 27.25% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C11orf71 Gene

Disorders for C11orf71 Gene

Relevant External Links for C11orf71

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C11orf71 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf71 Gene

Publications for C11orf71 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson D.G. … Nicolae D.L. (Nat. Genet. 2011) 3
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3

Products for C11orf71 Gene

Sources for C11orf71 Gene