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Aliases for C11orf71 Gene

Aliases for C11orf71 Gene

  • Chromosome 11 Open Reading Frame 71 2 3
  • Uncharacterized Protein C11orf71 3
  • Up-Regulated In Lung Cancer 7 3
  • URLC7 3

External Ids for C11orf71 Gene

Previous GeneCards Identifiers for C11orf71 Gene

  • GC11M113767
  • GC11M114262
  • GC11M110190

Summaries for C11orf71 Gene

GeneCards Summary for C11orf71 Gene

C11orf71 (Chromosome 11 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf71 Gene

Genomics for C11orf71 Gene

Regulatory Elements for C11orf71 Gene

Genomic Location for C11orf71 Gene

Start:
114,391,443 bp from pter
End:
114,400,550 bp from pter
Size:
9,108 bases
Orientation:
Minus strand

Genomic View for C11orf71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf71 Gene

Proteins for C11orf71 Gene

  • Protein details for C11orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6IPW1-CK071_HUMAN
    Recommended name:
    Uncharacterized protein C11orf71
    Protein Accession:
    Q6IPW1
    Secondary Accessions:
    • Q6IAD3
    • Q9NXX1

    Protein attributes for C11orf71 Gene

    Size:
    123 amino acids
    Molecular mass:
    13249 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C11orf71 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C11orf71 Gene

Proteomics data for C11orf71 Gene at MOPED

Post-translational modifications for C11orf71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf71 Gene

Domains for C11orf71 Gene

Protein Domains for C11orf71 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf71: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf71 Gene

Function for C11orf71 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C11orf71 Gene

Localization for C11orf71 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf71 Gene COMPARTMENTS Subcellular localization image for C11orf71 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf71 Gene

Pathways for C11orf71 Gene

SuperPathways for C11orf71 Gene

No Data Available

Interacting Proteins for C11orf71 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000325508%0d%0a9606.ENSP00000300571%0d%0a9606.ENSP00000221498%0d%0a
Selected Interacting proteins: ENSP00000325508 for C11orf71 Gene via STRING

Gene Ontology (GO) - Biological Process for C11orf71 Gene

None

No data available for Pathways by source for C11orf71 Gene

Transcripts for C11orf71 Gene

mRNA/cDNA for C11orf71 Gene

Unigene Clusters for C11orf71 Gene

Chromosome 11 open reading frame 71:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf71 Gene

No ASD Table

Relevant External Links for C11orf71 Gene

GeneLoc Exon Structure for
C11orf71
ECgene alternative splicing isoforms for
C11orf71

Expression for C11orf71 Gene

mRNA expression in normal human tissues for C11orf71 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C11orf71 Gene

SOURCE GeneReport for Unigene cluster for C11orf71 Gene Hs.715083

genes like me logo Genes that share expressions with C11orf71: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C11orf71 Gene

Orthologs for C11orf71 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C11orf71 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf71 35
  • 99.09 (n)
  • 98.64 (a)
C11orf71 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C15H11orf71 35
  • 79.24 (n)
  • 73.68 (a)
C15H11orf71 36
  • 64 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C11orf71 36
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm5617 35
  • 75.22 (n)
  • 67.26 (a)
Gm5617 16
Gm5617 36
  • 65 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1563941 35
  • 75.52 (n)
  • 66.37 (a)
Species with no ortholog for C11orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf71 Gene

ENSEMBL:
Gene Tree for C11orf71 (if available)
TreeFam:
Gene Tree for C11orf71 (if available)

Paralogs for C11orf71 Gene

No data available for Paralogs for C11orf71 Gene

Variants for C11orf71 Gene

Sequence variations from dbSNP and Humsavar for C11orf71 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs536442 -- 114,393,297(+) tacaa(A/G)ctcaa intron-variant
rs2155805 -- 114,392,165(-) TCAGC(C/T)TCCCA intron-variant
rs2365884 -- 114,392,594(+) GGTAT(G/T)GTGGT intron-variant
rs2509621 -- 114,391,136(+) cattg(C/T)actcc downstream-variant-500B
rs3066371 -- 114,392,550(+) AAAAA(-/AA)GAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf71 Gene

Variant ID Type Subtype PubMed ID
nsv898396 CNV Gain 21882294

Relevant External Links for C11orf71 Gene

HapMap Linkage Disequilibrium report
C11orf71

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf71 Gene

Disorders for C11orf71 Gene

No disorders were found for C11orf71 Gene.

No data available for UniProtKB/Swiss-Prot for C11orf71 Gene

Publications for C11orf71 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations. (PMID: 21804549) Torgerson D.G. … Nicolae D.L. (Nat. Genet. 2011) 3

Products for C11orf71 Gene

Sources for C11orf71 Gene

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