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Aliases for C11orf68 Gene

Aliases for C11orf68 Gene

  • Chromosome 11 Open Reading Frame 68 2 3 5
  • Basophilic Leukemia-Expressed Protein Bles03 3 4
  • Protein P5326 3 4
  • BLES03 3 4
  • Basophilic Leukemia Expressed Protein BLES03 3
  • Basophilic Leukemia-Expressed Protein 2
  • UPF0696 Protein C11orf68 3
  • P5326 3

External Ids for C11orf68 Gene

Previous GeneCards Identifiers for C11orf68 Gene

  • GC11M065441
  • GC11M065684
  • GC11M062010

Summaries for C11orf68 Gene

GeneCards Summary for C11orf68 Gene

C11orf68 (Chromosome 11 Open Reading Frame 68) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf68 Gene

Genomics for C11orf68 Gene

Regulatory Elements for C11orf68 Gene

Enhancers for C11orf68 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F065945 1.2 Ensembl ENCODE 12.6 -26.7 -26693 1.3 HDGF PKNOX1 ATF1 ZNF76 SIN3A RARA ZNF121 SCRT2 SP3 ZBTB11 C11orf68 DRAP1 FOSL1 BANF1 EIF1AD CST6 CTSW EFEMP2 CFL1 MUS81
GH11F065946 1.1 Ensembl 12.6 -27.8 -27784 0.2 POLR2A C11orf68 DRAP1 FOSL1 BANF1 EIF1AD CST6 CTSW EFEMP2 CFL1 MUS81
GH11F065940 0.5 Ensembl ENCODE 12.2 -22.5 -22460 2.4 HDAC1 ATF1 PKNOX1 CBX3 ARNT TBL1XR1 NFXL1 BMI1 RARA ELK1 CTSW SART1 C11orf68 DRAP1 FOSL1 CCDC85B FIBP EFEMP2 CFL1 BANF1
GH11F065910 1.3 FANTOM5 ENCODE 3 +3.4 3390 11.4 PKNOX1 MLX ZFP64 ARID4B SIN3A YY1 CBX5 ZNF207 ZNF143 FOS EIF1AD LOC105369352 FOSL1 TSGA10IP MRPL11 ZFPL1 SNX32 CST6 CTSW DRAP1
GH11F065609 0.9 FANTOM5 ENCODE 2.8 +305.1 305119 8.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MAP3K11 MRPL11 SIPA1 RNASEH2C CD248 CTSF NEAT1 LOC105369352 FAU EIF1AD
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C11orf68 on UCSC Golden Path with GeneCards custom track

Promoters for C11orf68 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000563936 -183 2201 PKNOX1 MLX ZFP64 ARID4B SIN3A YY1 CBX5 ZNF207 ZNF143 FOS

Genomic Location for C11orf68 Gene

Chromosome:
11
Start:
65,916,808 bp from pter
End:
65,919,117 bp from pter
Size:
2,310 bases
Orientation:
Minus strand

Genomic View for C11orf68 Gene

Genes around C11orf68 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf68 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf68 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf68 Gene

Proteins for C11orf68 Gene

  • Protein details for C11orf68 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H3H3-CK068_HUMAN
    Recommended name:
    UPF0696 protein C11orf68
    Protein Accession:
    Q9H3H3
    Secondary Accessions:
    • J3KQG9
    • Q9BT13

    Protein attributes for C11orf68 Gene

    Size:
    251 amino acids
    Molecular mass:
    27355 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH13185.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for C11orf68 Gene

    Alternative splice isoforms for C11orf68 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C11orf68 Gene

Post-translational modifications for C11orf68 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf68 Gene

No data available for DME Specific Peptides for C11orf68 Gene

Domains & Families for C11orf68 Gene

Protein Domains for C11orf68 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C11orf68 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H3H3

UniProtKB/Swiss-Prot:

CK068_HUMAN :
  • Belongs to the UPF0696 family.
Family:
  • Belongs to the UPF0696 family.
genes like me logo Genes that share domains with C11orf68: view

No data available for Gene Families for C11orf68 Gene

Function for C11orf68 Gene

Gene Ontology (GO) - Molecular Function for C11orf68 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with C11orf68: view
genes like me logo Genes that share phenotypes with C11orf68: view

Animal Model Products

miRNA for C11orf68 Gene

miRTarBase miRNAs that target C11orf68

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C11orf68 Gene

Localization for C11orf68 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf68 Gene COMPARTMENTS Subcellular localization image for C11orf68 gene
Compartment Confidence
nucleus 3
mitochondrion 2
cytosol 1
extracellular 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf68 Gene

Pathways & Interactions for C11orf68 Gene

SuperPathways for C11orf68 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C11orf68 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C11orf68 Gene

Transcripts for C11orf68 Gene

mRNA/cDNA for C11orf68 Gene

Unigene Clusters for C11orf68 Gene

Chromosome 11 open reading frame 68:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf68 Gene

ExUns: 1 ^ 2a · 2b
SP1:
SP2:

Relevant External Links for C11orf68 Gene

GeneLoc Exon Structure for
C11orf68
ECgene alternative splicing isoforms for
C11orf68

Expression for C11orf68 Gene

mRNA expression in normal human tissues for C11orf68 Gene

Protein differential expression in normal tissues from HIPED for C11orf68 Gene

This gene is overexpressed in Bone marrow stromal cell (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C11orf68 Gene



Protein tissue co-expression partners for C11orf68 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C11orf68 Gene:

C11orf68

SOURCE GeneReport for Unigene cluster for C11orf68 Gene:

Hs.433573
genes like me logo Genes that share expression patterns with C11orf68: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C11orf68 Gene

Orthologs for C11orf68 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf68 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf68 34
  • 99.2 (n)
C11ORF68 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C11orf68 35
  • 92 (a)
OneToOne
C18H11orf68 34
  • 90.23 (n)
cow
(Bos Taurus)
Mammalia C29H11orf68 34 35
  • 91.21 (n)
rat
(Rattus norvegicus)
Mammalia Bles03 34
  • 90.23 (n)
mouse
(Mus musculus)
Mammalia AI837181 34 16 35
  • 89.74 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia C11orf68 35
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c11orf68 34
  • 59.03 (n)
Str.20341 34
zebrafish
(Danio rerio)
Actinopterygii zgc:63470 34
  • 63.92 (n)
C7H11orf68 35
  • 56 (a)
OneToOne
zgc63470 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5323 34
Species where no ortholog for C11orf68 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf68 Gene

ENSEMBL:
Gene Tree for C11orf68 (if available)
TreeFam:
Gene Tree for C11orf68 (if available)

Paralogs for C11orf68 Gene

No data available for Paralogs for C11orf68 Gene

Variants for C11orf68 Gene

Sequence variations from dbSNP and Humsavar for C11orf68 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10143 -- 65,920,963(+) TGCCC(A/C/T)CTTTC upstream-variant-2KB, reference, missense
rs1055564 -- 65,920,935(+) AACCC(A/C)CACCC upstream-variant-2KB, reference, missense
rs10791832 -- 65,916,447(+) GCCTA(A/G)GGTGC downstream-variant-500B
rs111294902 -- 65,917,617(+) GAGCA(A/G)GCACT upstream-variant-2KB, reference, synonymous-codon
rs111381779 -- 65,920,906(+) AGATA(C/G)TGATG upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for C11orf68 Gene

Variant ID Type Subtype PubMed ID
esv2759834 CNV gain 17122850
nsv1159905 CNV duplication 26073780
nsv832191 CNV loss 17160897

Variation tolerance for C11orf68 Gene

Residual Variation Intolerance Score: 38.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.66; 31.70% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C11orf68 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C11orf68

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf68 Gene

Disorders for C11orf68 Gene

Relevant External Links for C11orf68

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C11orf68

No disorders were found for C11orf68 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf68 Gene

Publications for C11orf68 Gene

  1. The structure at 2.5 A resolution of human basophilic leukemia- expressed protein BLES03. (PMID: 16511166) Bitto E. … Phillips G.N. Jr. (Acta Crystallogr. F 2005) 2 3 4 22 64
  2. Genome-wide search for eliminylating domains reveals novel function for BLES03-like proteins. (PMID: 25062915) Khater S. … Mohanty D. (Genome Biol Evol 2014) 2 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for C11orf68 Gene

Sources for C11orf68 Gene

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