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Aliases for C11orf58 Gene

Aliases for C11orf58 Gene

  • Chromosome 11 Open Reading Frame 58 2 3
  • Small Acidic Protein 2 3
  • SMAP 3 4
  • IMAGE145052 3

External Ids for C11orf58 Gene

Previous GeneCards Identifiers for C11orf58 Gene

  • GC11P016717
  • GC11P016444

Summaries for C11orf58 Gene

GeneCards Summary for C11orf58 Gene

C11orf58 (Chromosome 11 Open Reading Frame 58) is a Protein Coding gene.

Gene Wiki entry for C11orf58 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf58 Gene

Genomics for C11orf58 Gene

Regulatory Elements for C11orf58 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C11orf58 Gene

Start:
16,613,132 bp from pter
End:
16,758,354 bp from pter
Size:
145,223 bases
Orientation:
Plus strand

Genomic View for C11orf58 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf58 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf58 Gene

Proteins for C11orf58 Gene

  • Protein details for C11orf58 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00193-SMAP_HUMAN
    Recommended name:
    Small acidic protein
    Protein Accession:
    O00193
    Secondary Accessions:
    • B2RD28

    Protein attributes for C11orf58 Gene

    Size:
    183 amino acids
    Molecular mass:
    20333 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf58 Gene

Proteomics data for C11orf58 Gene at MOPED

Post-translational modifications for C11orf58 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf58 Gene

No data available for DME Specific Peptides for C11orf58 Gene

Domains for C11orf58 Gene

Protein Domains for C11orf58 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

O00193

UniProtKB/Swiss-Prot:

SMAP_HUMAN :
  • O00193
Family:
  • Belongs to the SMAP family.
genes like me logo Genes that share domains with C11orf58: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for C11orf58 Gene

Function for C11orf58 Gene

Gene Ontology (GO) - Molecular Function for C11orf58 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C11orf58: view

Phenotypes for C11orf58 Gene

GenomeRNAi human phenotypes for C11orf58:
genes like me logo Genes that share phenotypes with C11orf58: view

Animal Model Products

CRISPR Products

miRNA for C11orf58 Gene

miRTarBase miRNAs that target C11orf58

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C11orf58

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C11orf58 Gene

Localization for C11orf58 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf58 Gene COMPARTMENTS Subcellular localization image for C11orf58 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for C11orf58 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with C11orf58: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C11orf58 Gene

Pathways for C11orf58 Gene

SuperPathways for C11orf58 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C11orf58 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C11orf58: view

No data available for Pathways by source for C11orf58 Gene

Compounds for C11orf58 Gene

(1) Novoseek inferred chemical compound relationships for C11orf58 Gene

Compound -log(P) Hits PubMed IDs
iron 3.57 1
genes like me logo Genes that share compounds with C11orf58: view

Transcripts for C11orf58 Gene

Unigene Clusters for C11orf58 Gene

Chromosome 11 open reading frame 58:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C11orf58

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf58 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d · 8e
SP1: - - - -
SP2: - - - - -
SP3: - - - -
SP4: - - - - - -
SP5: - - - - - -
SP6: - -
SP7: - - - - - -
SP8: - -
SP9: - - -

Relevant External Links for C11orf58 Gene

GeneLoc Exon Structure for
C11orf58
ECgene alternative splicing isoforms for
C11orf58

Expression for C11orf58 Gene

mRNA expression in normal human tissues for C11orf58 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C11orf58 Gene

SOURCE GeneReport for Unigene cluster for C11orf58 Gene Hs.645792

genes like me logo Genes that share expressions with C11orf58: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C11orf58 Gene

Orthologs for C11orf58 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf58 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf58 35
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia C15H11orf58 35
  • 93 (n)
  • 94.48 (a)
SMAP 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 90 (a)
OneToMany
-- 36
  • 99 (a)
OneToMany
C21H11orf58 35
  • 93.77 (n)
  • 95.6 (a)
mouse
(Mus musculus)
Mammalia 1110004F10Rik 35
  • 85.27 (n)
  • 92.27 (a)
1110004F10Rik 16
1110004F10Rik 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C11orf58 36
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C11orf58 36
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1311703 35
  • 85.27 (n)
  • 91.16 (a)
chicken
(Gallus gallus)
Aves C5H11ORF58 35
  • 77 (n)
  • 75.44 (a)
C5H11ORF58 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C11orf58 36
  • 74 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.18476 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c11orf58 35
  • 58.38 (n)
  • 55.8 (a)
Str.5966 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5834 35
zebrafish
(Danio rerio)
Actinopterygii C18H11orf58 36
  • 55 (a)
OneToOne
zgc56106 35
zgc:56106 35
  • 71.09 (n)
  • 75.51 (a)
Species with no ortholog for C11orf58:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf58 Gene

ENSEMBL:
Gene Tree for C11orf58 (if available)
TreeFam:
Gene Tree for C11orf58 (if available)

Paralogs for C11orf58 Gene

Selected SIMAP similar genes for C11orf58 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for C11orf58 Gene

genes like me logo Genes that share paralogs with C11orf58: view

No data available for Paralogs for C11orf58 Gene

Variants for C11orf58 Gene

Sequence variations from dbSNP and Humsavar for C11orf58 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs6677 -- 16,755,585(+) TAGTT(G/T)CCTGT utr-variant-3-prime
rs1044315 -- 16,757,719(+) AAATG(C/T)ACTTT utr-variant-3-prime
rs1139197 -- 16,740,460(+) gtggc(A/G)cgatc intron-variant
rs1139198 -- 16,740,482(+) cctgc(A/G)gcctc intron-variant
rs1139200 -- 16,740,489(+) cctcc(A/G)cctcc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf58 Gene

Variant ID Type Subtype PubMed ID
esv23566 CNV Loss 19812545
esv2571561 CNV Deletion 19546169

Relevant External Links for C11orf58 Gene

HapMap Linkage Disequilibrium report
C11orf58

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf58 Gene

Disorders for C11orf58 Gene

No disorders were found for C11orf58 Gene.

No data available for UniProtKB/Swiss-Prot for C11orf58 Gene

Publications for C11orf58 Gene

  1. Novel genes expressed in the chick otocyst during development: identification using differential display of RNA. (PMID: 9263035) Gong T.-W. … Lomax M.I. (Int. J. Dev. Neurosci. 1997) 2 3 4 23
  2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PMID: 15592455) Rush J. … Comb M.J. (Nat. Biotechnol. 2005) 3 4

Products for C11orf58 Gene

Sources for C11orf58 Gene

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