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Aliases for C11orf57 Gene

Aliases for C11orf57 Gene

  • Chromosome 11 Open Reading Frame 57 2 3

External Ids for C11orf57 Gene

Previous GeneCards Identifiers for C11orf57 Gene

  • GC11P111451
  • GC11P111944
  • GC11P107868

Summaries for C11orf57 Gene

GeneCards Summary for C11orf57 Gene

C11orf57 (Chromosome 11 Open Reading Frame 57) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf57 Gene

Genomics for C11orf57 Gene

Regulatory Elements for C11orf57 Gene

Genomic Location for C11orf57 Gene

Start:
112,074,086 bp from pter
End:
112,085,150 bp from pter
Size:
11,065 bases
Orientation:
Plus strand

Genomic View for C11orf57 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf57 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf57 Gene

Proteins for C11orf57 Gene

  • Protein details for C11orf57 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUT1-CK057_HUMAN
    Recommended name:
    Uncharacterized protein C11orf57
    Protein Accession:
    Q6ZUT1
    Secondary Accessions:
    • Q5RL41
    • Q6IN53
    • Q7Z357
    • Q8N2T3

    Protein attributes for C11orf57 Gene

    Size:
    292 amino acids
    Molecular mass:
    34110 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C11orf57 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C11orf57 Gene

Proteomics data for C11orf57 Gene at MOPED

Post-translational modifications for C11orf57 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C11orf57 Gene

Domains for C11orf57 Gene

Protein Domains for C11orf57 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf57: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf57 Gene

Function for C11orf57 Gene

Gene Ontology (GO) - Molecular Function for C11orf57 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C11orf57: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C11orf57

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C11orf57 Gene

Localization for C11orf57 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf57 Gene COMPARTMENTS Subcellular localization image for C11orf57 gene
Compartment Confidence
nucleus 3
mitochondrion 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf57 Gene

Pathways for C11orf57 Gene

SuperPathways for C11orf57 Gene

No Data Available

Interacting Proteins for C11orf57 Gene

Gene Ontology (GO) - Biological Process for C11orf57 Gene

None

No data available for Pathways by source for C11orf57 Gene

Transcripts for C11orf57 Gene

Unigene Clusters for C11orf57 Gene

Chromosome 11 open reading frame 57:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C11orf57

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf57 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b
SP1: - - - -
SP2: - -
SP3: - - - -
SP4: - - -
SP5: -
SP6: - - -
SP7: - -

Relevant External Links for C11orf57 Gene

GeneLoc Exon Structure for
C11orf57
ECgene alternative splicing isoforms for
C11orf57

Expression for C11orf57 Gene

mRNA expression in normal human tissues for C11orf57 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for C11orf57 Gene

SOURCE GeneReport for Unigene cluster for C11orf57 Gene Hs.195060

genes like me logo Genes that share expressions with C11orf57: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C11orf57 Gene

Orthologs for C11orf57 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C11orf57 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf57 35
  • 99.54 (n)
  • 99.32 (a)
C11orf57 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C15H11orf57 35
  • 93.41 (n)
  • 92.78 (a)
MGC143285 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C11orf57 36
  • 92 (a)
OneToOne
C5H11orf57 35
  • 92.61 (n)
  • 91.81 (a)
mouse
(Mus musculus)
Mammalia AU019823 35
  • 85.16 (n)
  • 83.9 (a)
AU019823 16
AU019823 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C11orf57 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C11orf57 36
  • 57 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100151767 35
  • 86.03 (n)
  • 83.85 (a)
chicken
(Gallus gallus)
Aves C11orf57 36
  • 50 (a)
OneToOne
C24H11ORF57 35
  • 67.13 (n)
  • 61.38 (a)
lizard
(Anolis carolinensis)
Reptilia C11orf57 36
  • 50 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1381 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c11orf57 35
  • 54.69 (n)
  • 45.91 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5815 35
zebrafish
(Danio rerio)
Actinopterygii C15H11orf57 36
  • 42 (a)
OneToOne
Species with no ortholog for C11orf57:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C11orf57 Gene

ENSEMBL:
Gene Tree for C11orf57 (if available)
TreeFam:
Gene Tree for C11orf57 (if available)

Paralogs for C11orf57 Gene

No data available for Paralogs for C11orf57 Gene

Variants for C11orf57 Gene

Sequence variations from dbSNP and Humsavar for C11orf57 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs10255 -- 112,083,292(-) GATTG(G/T)TGTAC utr-variant-3-prime, nc-transcript-variant
rs483788 -- 112,076,833(+) ATGAC(A/G)ATTCT intron-variant
rs560490 -- 112,080,270(-) AAAAA(A/G)GGCAA intron-variant
rs1139692 -- 112,084,240(-) TACTG(G/T)GAAGT utr-variant-3-prime, nc-transcript-variant
rs1139693 -- 112,084,195(-) GAAGG(G/T)GAACT utr-variant-3-prime, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf57 Gene

Variant ID Type Subtype PubMed ID
esv2745077 CNV Deletion 23290073

Relevant External Links for C11orf57 Gene

HapMap Linkage Disequilibrium report
C11orf57

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf57 Gene

Disorders for C11orf57 Gene

(1) University of Copenhagen DISEASES for C11orf57 Gene

genes like me logo Genes that share disorders with C11orf57: view

No data available for UniProtKB/Swiss-Prot for C11orf57 Gene

Publications for C11orf57 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim J.M. … Kim N.S. (DNA Res. 2006) 3

Products for C11orf57 Gene

Sources for C11orf57 Gene

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