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Aliases for C11orf52 Gene

Aliases for C11orf52 Gene

  • Chromosome 11 Open Reading Frame 52 2 3 5

External Ids for C11orf52 Gene

Previous GeneCards Identifiers for C11orf52 Gene

  • GC11P111295
  • GC11P111789
  • GC11P107713

Summaries for C11orf52 Gene

GeneCards Summary for C11orf52 Gene

C11orf52 (Chromosome 11 Open Reading Frame 52) is a Protein Coding gene.

Additional gene information for C11orf52 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf52 Gene

Genomics for C11orf52 Gene

GeneHancer (GH) Regulatory Elements for C11orf52 Gene

Promoters and enhancers for C11orf52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I111917 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 556.7 +0.7 714 2.3 ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 RXRA REST ZNF518A KAT8 C11orf52 LOC105369494 PPP2R1B C11orf1 FDXACB1 ALG9 SDHD CRYAB HSPB2-C11orf52
GH11I111974 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 16.8 +59.0 58962 5 PKNOX1 KLF17 MZF1 SIN3A FEZF1 RAD21 ZNF335 GLIS2 ELK1 SCRT2 DIXDC1 C11orf52 PPP2R1B CRYAB HSPB2 HSPB2-C11orf52 SDHD SIK2 ENSG00000255286 ENSG00000255334
GH11I111934 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.1 +22.0 22033 11.8 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 DIXDC1 PPP2R1B SDHD C11orf52 HSPB2 HSPB2-C11orf52 TIMM8B ENSG00000255292 FDXACB1 C11orf1
GH11I112023 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.5 +107.1 107100 2.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 DLAT PPP2R1B FDXACB1 ALG9 PIH1D2 NKAPD1 DIXDC1 IL18 CRYAB C11orf52
GH11I111870 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 -46.7 -46710 2.2 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 ALG9 PPP2R1B DIXDC1 HSPB2-C11orf52 HSPB2 C11orf52 CRYAB PIH1D2 NKAPD1 ENSG00000258529
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C11orf52 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C11orf52 gene promoter:

Genomic Locations for C11orf52 Gene

Genomic Locations for C11orf52 Gene
chr11:111,918,032-111,926,872
(GRCh38/hg38)
Size:
8,841 bases
Orientation:
Plus strand
chr11:111,788,756-111,797,596
(GRCh37/hg19)

Genomic View for C11orf52 Gene

Genes around C11orf52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf52 Gene

Proteins for C11orf52 Gene

  • Protein details for C11orf52 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A22-CK052_HUMAN
    Recommended name:
    Uncharacterized protein C11orf52
    Protein Accession:
    Q96A22

    Protein attributes for C11orf52 Gene

    Size:
    123 amino acids
    Molecular mass:
    13921 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf52 Gene

Post-translational modifications for C11orf52 Gene

No Post-translational modifications

Other Protein References for C11orf52 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf52 Gene

Domains & Families for C11orf52 Gene

Gene Families for C11orf52 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C11orf52 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf52: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf52 Gene

Function for C11orf52 Gene

genes like me logo Genes that share phenotypes with C11orf52: view

miRNA for C11orf52 Gene

miRTarBase miRNAs that target C11orf52

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C11orf52 Gene

Localization for C11orf52 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C11orf52 gene
Compartment Confidence
extracellular 5
mitochondrion 2
nucleus 2
peroxisome 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cell Junctions (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for C11orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome HDA 19056867
genes like me logo Genes that share ontologies with C11orf52: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C11orf52 Gene

Pathways & Interactions for C11orf52 Gene

SuperPathways for C11orf52 Gene

No Data Available

Interacting Proteins for C11orf52 Gene

Selected Interacting proteins: Q96A22-CK052_HUMAN for C11orf52 Gene via IID

Gene Ontology (GO) - Biological Process for C11orf52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C11orf52 Gene

Drugs & Compounds for C11orf52 Gene

No Compound Related Data Available

Transcripts for C11orf52 Gene

mRNA/cDNA for C11orf52 Gene

Unigene Clusters for C11orf52 Gene

Chromosome 11 open reading frame 52:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf52 Gene

No ASD Table

Relevant External Links for C11orf52 Gene

GeneLoc Exon Structure for
C11orf52
ECgene alternative splicing isoforms for
C11orf52

Expression for C11orf52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C11orf52 Gene

Protein differential expression in normal tissues from HIPED for C11orf52 Gene

This gene is overexpressed in Urine (39.2), Placenta (13.7), and Lung (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C11orf52 Gene



Protein tissue co-expression partners for C11orf52 Gene

NURSA nuclear receptor signaling pathways regulating expression of C11orf52 Gene:

C11orf52

SOURCE GeneReport for Unigene cluster for C11orf52 Gene:

Hs.97013

Evidence on tissue expression from TISSUES for C11orf52 Gene

  • Liver(4.2)
  • Stomach(4.2)
  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with C11orf52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C11orf52 Gene

Orthologs for C11orf52 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C11orf52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf52 33
  • 99.19 (n)
C11orf52 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C5H11orf52 33
  • 82.38 (n)
C11orf52 34
  • 66 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C15H11orf52 33
  • 81.84 (n)
C11orf52 34
  • 62 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2310030G06Rik 33 16 34
  • 75.88 (n)
rat
(Rattus norvegicus)
Mammalia LOC689959 33
  • 72.9 (n)
Species where no ortholog for C11orf52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf52 Gene

ENSEMBL:
Gene Tree for C11orf52 (if available)
TreeFam:
Gene Tree for C11orf52 (if available)

Paralogs for C11orf52 Gene

No data available for Paralogs for C11orf52 Gene

Variants for C11orf52 Gene

Sequence variations from dbSNP and Humsavar for C11orf52 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000403837 -- 111,918,856(+) A/T upstream_transcript_variant
rs1001245516 -- 111,924,842(+) G/A intron_variant
rs1001320644 -- 111,925,123(+) A/G intron_variant
rs1002509286 -- 111,917,044(+) A/G upstream_transcript_variant
rs1003261138 -- 111,921,478(+) A/G intron_variant

Variation tolerance for C11orf52 Gene

Residual Variation Intolerance Score: 74.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.90; 74.30% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C11orf52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C11orf52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C11orf52 Gene

Disorders for C11orf52 Gene

Additional Disease Information for C11orf52

No disorders were found for C11orf52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf52 Gene

Publications for C11orf52 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y … Zou H (Journal of proteomics 2014) 4 58
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M … Moll S (Journal of proteomics 2013) 3 58
  5. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S … Drake RR (Proteomics 2013) 3 58

Products for C11orf52 Gene

Sources for C11orf52 Gene

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