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Aliases for C11orf42 Gene

Aliases for C11orf42 Gene

  • Chromosome 11 Open Reading Frame 42 2 3 5

External Ids for C11orf42 Gene

Previous GeneCards Identifiers for C11orf42 Gene

  • GC11P006187
  • GC11P005888

Summaries for C11orf42 Gene

GeneCards Summary for C11orf42 Gene

C11orf42 (Chromosome 11 Open Reading Frame 42) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf42 Gene

Genomics for C11orf42 Gene

Regulatory Elements for C11orf42 Gene

Enhancers for C11orf42 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around C11orf42 on UCSC Golden Path with GeneCards custom track

Genomic Location for C11orf42 Gene

6,205,043 bp from pter
6,231,450 bp from pter
26,408 bases
Plus strand

Genomic View for C11orf42 Gene

Genes around C11orf42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C11orf42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C11orf42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf42 Gene

Proteins for C11orf42 Gene

  • Protein details for C11orf42 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C11orf42
    Protein Accession:

    Protein attributes for C11orf42 Gene

    333 amino acids
    Molecular mass:
    36368 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf42 Gene

Post-translational modifications for C11orf42 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C11orf42 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf42 Gene

Domains & Families for C11orf42 Gene

Protein Domains for C11orf42 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf42: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C11orf42 Gene

Function for C11orf42 Gene

genes like me logo Genes that share phenotypes with C11orf42: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C11orf42 Gene

Localization for C11orf42 Gene

Subcellular locations from

Jensen Localization Image for C11orf42 Gene COMPARTMENTS Subcellular localization image for C11orf42 gene
Compartment Confidence
cytosol 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf42 Gene

Pathways & Interactions for C11orf42 Gene

SuperPathways for C11orf42 Gene

No Data Available

Interacting Proteins for C11orf42 Gene

Selected Interacting proteins: Q8N5U0-CK042_HUMAN for C11orf42 Gene via IID

Gene Ontology (GO) - Biological Process for C11orf42 Gene


No data available for Pathways by source and SIGNOR curated interactions for C11orf42 Gene

Drugs & Compounds for C11orf42 Gene

No Compound Related Data Available

Transcripts for C11orf42 Gene

mRNA/cDNA for C11orf42 Gene

(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C11orf42 Gene

Chromosome 11 open reading frame 42:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf42 Gene

No ASD Table

Relevant External Links for C11orf42 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C11orf42 Gene

mRNA expression in normal human tissues for C11orf42 Gene

mRNA differential expression in normal tissues according to GTEx for C11orf42 Gene

This gene is overexpressed in Testis (x36.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C11orf42 Gene

NURSA nuclear receptor signaling pathways regulating expression of C11orf42 Gene:


SOURCE GeneReport for Unigene cluster for C11orf42 Gene:

genes like me logo Genes that share expression patterns with C11orf42: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C11orf42 Gene

Orthologs for C11orf42 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C11orf42 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C15H11orf42 34
  • 89.09 (n)
  • 87.09 (a)
C11orf42 35
  • 87 (a)
(Canis familiaris)
Mammalia C21H11orf42 34
  • 89.99 (n)
  • 90.09 (a)
C11orf42 35
  • 90 (a)
(Mus musculus)
Mammalia Gm5901 34
  • 87.99 (n)
  • 86.49 (a)
Gm5901 16
Gm5901 35
  • 86 (a)
(Pan troglodytes)
Mammalia C11H11orf42 34
  • 99.6 (n)
  • 98.8 (a)
C11orf42 35
  • 99 (a)
(Rattus norvegicus)
Mammalia RGD1561034 34
  • 88.19 (n)
  • 86.49 (a)
(Monodelphis domestica)
Mammalia C11orf42 35
  • 66 (a)
Species where no ortholog for C11orf42 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf42 Gene

Gene Tree for C11orf42 (if available)
Gene Tree for C11orf42 (if available)

Paralogs for C11orf42 Gene

No data available for Paralogs for C11orf42 Gene

Variants for C11orf42 Gene

Sequence variations from dbSNP and Humsavar for C11orf42 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10769671 - 6,210,501(+) CAGCA(C/T)CTGCT nc-transcript-variant, reference, missense
rs10500659 -- 6,207,364(+) TTCAC(C/G)CTTTT intron-variant
rs34372732 -- 6,207,885(+) CAGAA(-/A)GGCCA intron-variant
rs10742968 -- 6,205,853(+) CGAAC(C/T)GCCCC intron-variant
rs34692897 -- 6,207,275(+) TAAGG(-/G)AGGGT intron-variant

Variation tolerance for C11orf42 Gene

Residual Variation Intolerance Score: 60.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.40; 27.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C11orf42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C11orf42 Gene

Disorders for C11orf42 Gene

Relevant External Links for C11orf42

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C11orf42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C11orf42 Gene

Publications for C11orf42 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 65
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 65

Products for C11orf42 Gene

Sources for C11orf42 Gene

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