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Aliases for C11orf40 Gene

Aliases for C11orf40 Gene

  • Chromosome 11 Open Reading Frame 40 2 3
  • Ro/SSA1-Related Protein 3 4
  • NOV1 3 4
  • Putative Uncharacterized Protein C11orf40 3

External Ids for C11orf40 Gene

Summaries for C11orf40 Gene

GeneCards Summary for C11orf40 Gene

C11orf40 (Chromosome 11 Open Reading Frame 40) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C11orf40 Gene

Genomics for C11orf40 Gene

Genomic Location for C11orf40 Gene

Start:
4,571,423 bp from pter
End:
4,577,820 bp from pter
Size:
6,398 bases
Orientation:
Minus strand

Genomic View for C11orf40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C11orf40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C11orf40 Gene

No data available for Regulatory Elements for C11orf40 Gene

Proteins for C11orf40 Gene

  • Protein details for C11orf40 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WZ69-CK040_HUMAN
    Recommended name:
    Putative uncharacterized protein C11orf40
    Protein Accession:
    Q8WZ69
    Secondary Accessions:

    Protein attributes for C11orf40 Gene

    Size:
    217 amino acids
    Molecular mass:
    24620 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C11orf40 Gene

Proteomics data for C11orf40 Gene at MOPED

Post-translational modifications for C11orf40 Gene

No Post-translational modifications

Other Protein References for C11orf40 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C11orf40 Gene

Domains for C11orf40 Gene

Protein Domains for C11orf40 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C11orf40 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C11orf40: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C11orf40 Gene

Function for C11orf40 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C11orf40 Gene

Localization for C11orf40 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C11orf40 Gene COMPARTMENTS Subcellular localization image for C11orf40 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C11orf40 Gene

Pathways for C11orf40 Gene

SuperPathways for C11orf40 Gene

No Data Available

Interacting Proteins for C11orf40 Gene

Gene Ontology (GO) - Biological Process for C11orf40 Gene

None

No data available for Pathways by source for C11orf40 Gene

Transcripts for C11orf40 Gene

mRNA/cDNA for C11orf40 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C11orf40 Gene

No ASD Table

Relevant External Links for C11orf40 Gene

GeneLoc Exon Structure for
C11orf40
ECgene alternative splicing isoforms for
C11orf40

Expression for C11orf40 Gene

mRNA expression in normal human tissues for C11orf40 Gene

SOURCE GeneReport for Unigene cluster for C11orf40 Gene Hs.350556

genes like me logo Genes that share expressions with C11orf40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for C11orf40 Gene

Orthologs for C11orf40 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C11orf40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C11H11orf40 35
  • 98.76 (n)
  • 96.73 (a)
C11orf40 36
  • 97 (a)
OneToOne
Species with no ortholog for C11orf40:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C11orf40 Gene

ENSEMBL:
Gene Tree for C11orf40 (if available)
TreeFam:
Gene Tree for C11orf40 (if available)

Paralogs for C11orf40 Gene

No data available for Paralogs for C11orf40 Gene

Variants for C11orf40 Gene

Sequence variations from dbSNP and Humsavar for C11orf40 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs919518 -- 4,573,694(-) TTCAA(A/G)GCATT intron-variant
rs919519 -- 4,573,509(-) AAAAA(A/G)ACTCC intron-variant
rs1001697 -- 4,579,715(-) AAAGA(A/T)CTATC upstream-variant-2KB
rs1505201 -- 4,574,392(+) GGAAC(C/T)TAAGA intron-variant
rs1505202 -- 4,575,667(+) CCGTG(C/T)TCGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C11orf40 Gene

Variant ID Type Subtype PubMed ID
nsv896911 CNV Gain 21882294
nsv832055 CNV Loss 17160897
nsv896914 CNV Gain 21882294

Relevant External Links for C11orf40 Gene

HapMap Linkage Disequilibrium report
C11orf40
Human Gene Mutation Database (HGMD)
C11orf40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C11orf40 Gene

Disorders for C11orf40 Gene

Relevant External Links for C11orf40

Genetic Association Database (GAD)
C11orf40
Human Genome Epidemiology (HuGE) Navigator
C11orf40
genes like me logo Genes that share disorders with C11orf40: view

No data available for UniProtKB/Swiss-Prot for C11orf40 Gene

Publications for C11orf40 Gene

  1. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S. … Seielstad M. (Genes Immun. 2010) 3

Products for C11orf40 Gene

Sources for C11orf40 Gene

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