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Aliases for C10orf99 Gene

Aliases for C10orf99 Gene

  • Chromosome 10 Open Reading Frame 99 2 3
  • Colon-Derived SUSD2 Binding Factor 2 3 4
  • Anti-Microbial Peptide With 57 Amino Acid Residues 2 3
  • Antimicrobial Peptide-57 3 4
  • AP-57 3 4
  • CSBF 3 4
  • Secreted Protein C10orf99 3
  • RLLV1833 3
  • UNQ1833 3

External Ids for C10orf99 Gene

Previous GeneCards Identifiers for C10orf99 Gene

  • GC10P085590
  • GC10P085923
  • GC10P079779

Summaries for C10orf99 Gene

GeneCards Summary for C10orf99 Gene

C10orf99 (Chromosome 10 Open Reading Frame 99) is a Protein Coding gene.

UniProtKB/Swiss-Prot for C10orf99 Gene

  • Potential cytokine proposed to be a ligand of SUSD2; can induce SUSD2 internalization upon binding. May be a tumor suppressor; together with SUSD2 has a growth inhibitory effect on colon cancer cells which includes G1 cell cycle arrest (PubMed:25351403). Specifically inhibits cell growth of lymphoblastoid Raji cell line (PubMed:25585381).

  • Has antimicrobial activity against Gram-positive bacteria, including Staphylococcus aureus and Actinomyces spec., and Mycoplasma hominis and lentivirus (PubMed:25585381).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf99 Gene

Genomics for C10orf99 Gene

Regulatory Elements for C10orf99 Gene

Genomic Location for C10orf99 Gene

Start:
84,173,738 bp from pter
End:
84,185,294 bp from pter
Size:
11,557 bases
Orientation:
Plus strand

Genomic View for C10orf99 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf99 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf99 Gene

Proteins for C10orf99 Gene

  • Protein details for C10orf99 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UWK7-CJ099_HUMAN
    Recommended name:
    Secreted protein C10orf99
    Protein Accession:
    Q6UWK7
    Secondary Accessions:

    Protein attributes for C10orf99 Gene

    Size:
    81 amino acids
    Molecular mass:
    9173 Da
    Quaternary structure:
    • Interacts with SUSD2; the interaction is direct

neXtProt entry for C10orf99 Gene

Proteomics data for C10orf99 Gene at MOPED

Post-translational modifications for C10orf99 Gene

Other Protein References for C10orf99 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf99 Gene

Domains for C10orf99 Gene

Protein Domains for C10orf99 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf99: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf99 Gene

Function for C10orf99 Gene

Molecular function for C10orf99 Gene

UniProtKB/Swiss-Prot Function: Potential cytokine proposed to be a ligand of SUSD2; can induce SUSD2 internalization upon binding. May be a tumor suppressor; together with SUSD2 has a growth inhibitory effect on colon cancer cells which includes G1 cell cycle arrest (PubMed:25351403). Specifically inhibits cell growth of lymphoblastoid Raji cell line (PubMed:25585381).
UniProtKB/Swiss-Prot Function: Has antimicrobial activity against Gram-positive bacteria, including Staphylococcus aureus and Actinomyces spec., and Mycoplasma hominis and lentivirus (PubMed:25585381).

Gene Ontology (GO) - Molecular Function for C10orf99 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IEA --
genes like me logo Genes that share ontologies with C10orf99: view

Phenotypes for C10orf99 Gene

GenomeRNAi human phenotypes for C10orf99:
genes like me logo Genes that share phenotypes with C10orf99: view

miRNA for C10orf99 Gene

miRTarBase miRNAs that target C10orf99

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for C10orf99 Gene

Localization for C10orf99 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C10orf99 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf99 Gene COMPARTMENTS Subcellular localization image for C10orf99 gene
Compartment Confidence
extracellular 3

Gene Ontology (GO) - Cellular Components for C10orf99 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IDA 25351403
GO:0005615 extracellular space IEA --
genes like me logo Genes that share ontologies with C10orf99: view

Pathways for C10orf99 Gene

SuperPathways for C10orf99 Gene

No Data Available

Interacting Proteins for C10orf99 Gene

Gene Ontology (GO) - Biological Process for C10orf99 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050830 defense response to Gram-positive bacterium IDA 25585381
GO:0050832 defense response to fungus IDA 25585381
GO:0051782 negative regulation of cell division IDA 25351403
GO:1902807 negative regulation of cell cycle G1/S phase transition IDA 25351403
genes like me logo Genes that share ontologies with C10orf99: view

No data available for Pathways by source for C10orf99 Gene

Transcripts for C10orf99 Gene

mRNA/cDNA for C10orf99 Gene

Unigene Clusters for C10orf99 Gene

Chromosome 10 open reading frame 99:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf99 Gene

No ASD Table

Relevant External Links for C10orf99 Gene

GeneLoc Exon Structure for
C10orf99
ECgene alternative splicing isoforms for
C10orf99

Expression for C10orf99 Gene

mRNA expression in normal human tissues for C10orf99 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C10orf99 Gene

This gene is overexpressed in Colon - Transverse (18.9), Esophagus - Mucosa (12.9), and Vagina (6.8).

SOURCE GeneReport for Unigene cluster for C10orf99 Gene Hs.298713

mRNA Expression by UniProt/SwissProt for C10orf99 Gene

Q6UWK7-CJ099_HUMAN
Tissue specificity: Expressed at high levels in colon and at moderate level in tonsil. Highly reduced expression in primary colon cancer tissues compared with that in adjacent tissues (PubMed:25351403). Highest levels of expression detected in stomach and colon; expressed in epithelium of skin and esophagus, and in some tumor and/or tumor adjacent tissues (TAT), including TAT of esophagus cancer, hepatocellular carcinoma (HCC), squamous cell carcinoma (SCC), basal cell carcinoma (BCC) and invasive ductal carcinoma (IDC) tissues (at protein level) (PubMed:25585381).
genes like me logo Genes that share expressions with C10orf99: view

No data available for Protein expression for C10orf99 Gene

Orthologs for C10orf99 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for C10orf99 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf99 35
  • 100 (n)
  • 100 (a)
C10orf99 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2610528A11Rik 16
2610528A11Rik 36
  • 56 (a)
OneToOne
Species with no ortholog for C10orf99:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf99 Gene

ENSEMBL:
Gene Tree for C10orf99 (if available)
TreeFam:
Gene Tree for C10orf99 (if available)

Paralogs for C10orf99 Gene

No data available for Paralogs for C10orf99 Gene

Variants for C10orf99 Gene

Sequence variations from dbSNP and Humsavar for C10orf99 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs13697 -- 84,185,099(-) TTGCC(A/T)CCCTG utr-variant-3-prime
rs3887087 -- 84,174,494(-) AAAAA(A/G)AAAAA intron-variant
rs4315004 -- 84,179,795(+) CAATG(G/T)GACAA intron-variant
rs4336973 -- 84,174,481(+) TGCCC(C/T)ttttt intron-variant
rs4348833 -- 84,176,404(+) AGCCC(C/T)GTGCC intron-variant

Relevant External Links for C10orf99 Gene

HapMap Linkage Disequilibrium report
C10orf99

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C10orf99 Gene

Disorders for C10orf99 Gene

No disorders were found for C10orf99 Gene.

No data available for UniProtKB/Swiss-Prot for C10orf99 Gene

Publications for C10orf99 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3 4
  2. CSBF/C10orf99, a novel potential cytokine, inhibits colon cancer cell growth through inducing G1 arrest. (PMID: 25351403) Pan W. … Han W. (Sci. Rep. 2014) 2 3 4
  3. AP-57/C10orf99 is a new type of mutifunctional antimicrobial peptide. (PMID: 25585381) Yang M. … Tong A. (Biochem. Biophys. Res. Commun. 2015) 2 3 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C10orf99 Gene

Sources for C10orf99 Gene

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