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Aliases for C10orf88 Gene

Aliases for C10orf88 Gene

  • Chromosome 10 Open Reading Frame 88 2 3

External Ids for C10orf88 Gene

Previous GeneCards Identifiers for C10orf88 Gene

  • GC10M124230
  • GC10M124681
  • GC10M118307

Summaries for C10orf88 Gene

GeneCards Summary for C10orf88 Gene

C10orf88 (Chromosome 10 Open Reading Frame 88) is a Protein Coding gene. GO annotations related to this gene include identical protein binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf88 Gene

Genomics for C10orf88 Gene

Regulatory Elements for C10orf88 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C10orf88 Gene

Start:
122,930,903 bp from pter
End:
122,954,403 bp from pter
Size:
23,501 bases
Orientation:
Minus strand

Genomic View for C10orf88 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf88 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf88 Gene

Proteins for C10orf88 Gene

  • Protein details for C10orf88 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H8K7-CJ088_HUMAN
    Recommended name:
    Uncharacterized protein C10orf88
    Protein Accession:
    Q9H8K7
    Secondary Accessions:
    • Q0P6C6
    • Q8N597

    Protein attributes for C10orf88 Gene

    Size:
    445 amino acids
    Molecular mass:
    49249 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf88 Gene

Proteomics data for C10orf88 Gene at MOPED

Post-translational modifications for C10orf88 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf88 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for C10orf88 Gene

Domains for C10orf88 Gene

Protein Domains for C10orf88 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf88: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf88 Gene

Function for C10orf88 Gene

Gene Ontology (GO) - Molecular Function for C10orf88 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042802 identical protein binding IEA --
genes like me logo Genes that share ontologies with C10orf88: view

Animal Model Products

CRISPR Products

miRNA for C10orf88 Gene

miRTarBase miRNAs that target C10orf88

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf88

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C10orf88 Gene

Localization for C10orf88 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf88 Gene COMPARTMENTS Subcellular localization image for C10orf88 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
golgi apparatus 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf88 Gene

Pathways for C10orf88 Gene

SuperPathways for C10orf88 Gene

No Data Available

Interacting Proteins for C10orf88 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000419126%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000358120%0d%0a
Selected Interacting proteins: ENSP00000419126 Q9H8K7-CJ088_HUMAN for C10orf88 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for C10orf88 Gene

None

No data available for Pathways by source for C10orf88 Gene

Transcripts for C10orf88 Gene

mRNA/cDNA for C10orf88 Gene

Unigene Clusters for C10orf88 Gene

Chromosome 10 open reading frame 88:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf88

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf88 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8
SP1: -
SP2: -
SP3: - -
SP4: -

Relevant External Links for C10orf88 Gene

GeneLoc Exon Structure for
C10orf88
ECgene alternative splicing isoforms for
C10orf88

Expression for C10orf88 Gene

mRNA expression in normal human tissues for C10orf88 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for C10orf88 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C10orf88 Gene

SOURCE GeneReport for Unigene cluster for C10orf88 Gene Hs.501286

genes like me logo Genes that share expressions with C10orf88: view

Expression partners for C10orf88 Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C10orf88 Gene

Orthologs for C10orf88 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf88 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C26H10orf88 35
  • 82.16 (n)
  • 74.15 (a)
-- 36
  • 75 (a)
OneToMany
-- 36
  • 74 (a)
OneToMany
dog
(Canis familiaris)
Mammalia C28H10orf88 35
  • 80.22 (n)
  • 71.69 (a)
-- 36
  • 72 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 2310057M21Rik 35
  • 78.9 (n)
  • 70.95 (a)
2310057M21Rik 16
2310057M21Rik 36
  • 71 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf88 35
  • 99.1 (n)
  • 97.75 (a)
C10orf88 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1305014 35
  • 79.88 (n)
  • 72.3 (a)
oppossum
(Monodelphis domestica)
Mammalia C10orf88 36
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf88 36
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves C6H10ORF88 35
  • 59.81 (n)
  • 51.83 (a)
C10orf88 36
  • 45 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C10orf88 36
  • 40 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485309 35
  • 48.94 (n)
  • 37.23 (a)
zebrafish
(Danio rerio)
Actinopterygii si:rp71-19m20.1 35
  • 48.16 (n)
  • 36.12 (a)
C12H10orf88 36
  • 30 (a)
OneToOne
Species with no ortholog for C10orf88:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf88 Gene

ENSEMBL:
Gene Tree for C10orf88 (if available)
TreeFam:
Gene Tree for C10orf88 (if available)

Paralogs for C10orf88 Gene

Pseudogenes.org Pseudogenes for C10orf88 Gene

genes like me logo Genes that share paralogs with C10orf88: view

No data available for Paralogs for C10orf88 Gene

Variants for C10orf88 Gene

Sequence variations from dbSNP and Humsavar for C10orf88 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1106056 -- 122,953,445(+) CAAGA(A/G)GCGCT intron-variant
rs2901360 -- 122,934,894(+) tttcc(A/C)taata intron-variant
rs3841342 -- 122,955,032(+) GGAAA(-/G)GGGGG upstream-variant-2KB
rs4145321 -- 122,939,569(-) AAACA(A/G)GATAA intron-variant
rs4523634 -- 122,940,857(+) TGTTC(C/T)TGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf88 Gene

Variant ID Type Subtype PubMed ID
nsv832010 CNV Gain 17160897
esv6242 OTHER Inversion 19470904

Relevant External Links for C10orf88 Gene

HapMap Linkage Disequilibrium report
C10orf88

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf88 Gene

Disorders for C10orf88 Gene

Relevant External Links for C10orf88

Human Genome Epidemiology (HuGE) Navigator
C10orf88

No disorders were found for C10orf88 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C10orf88 Gene

Publications for C10orf88 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C10orf88 Gene

Sources for C10orf88 Gene

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