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Aliases for C10orf82 Gene

Aliases for C10orf82 Gene

  • Chromosome 10 Open Reading Frame 82 2 3 5

External Ids for C10orf82 Gene

Previous GeneCards Identifiers for C10orf82 Gene

  • GC10M118088
  • GC10M118413
  • GC10M112051

Summaries for C10orf82 Gene

GeneCards Summary for C10orf82 Gene

C10orf82 (Chromosome 10 Open Reading Frame 82) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf82 Gene

Genomics for C10orf82 Gene

Regulatory Elements for C10orf82 Gene

Enhancers for C10orf82 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G116769 1.1 Ensembl ENCODE 10.4 -100.9 -100949 2.6 ELF3 ATF1 ARID4B RAD21 RARA FOS CREM HMG20B SP5 CEBPB HSPA12A LOC105378499 C10orf82 LOC105378498 RPL5P27
GH10G116707 0.5 ENCODE 22.7 -38.3 -38268 1.2 CBX8 RNF2 ZNF140 C10orf82 HSPA12A LOC105378499 RPL5P27
GH10G116690 0.7 ENCODE 13.7 -21.1 -21147 2.4 SCRT1 CTCF ZIC2 RAD21 NR2F2 POLR2A GLIS1 SCRT2 CTBP2 SMC3 HSPA12A C10orf82 RPL5P27
GH10G116687 0.6 Ensembl ENCODE 13.7 -18.2 -18249 1.8 CTCF HSPA12A C10orf82 RPL5P27
GH10G116834 0.8 ENCODE 9.4 -165.4 -165416 2.5 CTCF TEAD4 RAD21 ZIC2 ZFHX2 SMC3 MAFK EZH2 EGR2 ZNF263 LOC105378499 C10orf82 PIR57757 ENO4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C10orf82 on UCSC Golden Path with GeneCards custom track

Promoters for C10orf82 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000033942 169 601 JUND L3MBTL2 POLR2A KLF9 REST FOS RBBP5

Genomic Location for C10orf82 Gene

Chromosome:
10
Start:
116,662,211 bp from pter
End:
116,670,269 bp from pter
Size:
8,059 bases
Orientation:
Minus strand

Genomic View for C10orf82 Gene

Genes around C10orf82 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf82 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf82 Gene

Proteins for C10orf82 Gene

  • Protein details for C10orf82 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WW14-CJ082_HUMAN
    Recommended name:
    Uncharacterized protein C10orf82
    Protein Accession:
    Q8WW14
    Secondary Accessions:
    • B3KUM9
    • D3DRC3

    Protein attributes for C10orf82 Gene

    Size:
    230 amino acids
    Molecular mass:
    25923 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C10orf82 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C10orf82 Gene

Post-translational modifications for C10orf82 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C10orf82 Gene

Domains & Families for C10orf82 Gene

Protein Domains for C10orf82 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf82: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf82 Gene

Function for C10orf82 Gene

genes like me logo Genes that share phenotypes with C10orf82: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf82 Gene

Localization for C10orf82 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C10orf82 gene
Compartment Confidence
extracellular 3
peroxisome 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf82 Gene

Pathways & Interactions for C10orf82 Gene

SuperPathways for C10orf82 Gene

No Data Available

Interacting Proteins for C10orf82 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000358212%0d%0a9606.ENSP00000340995%0d%0a
Selected Interacting proteins: Q8WW14-CJ082_HUMAN ENSP00000358212 for C10orf82 Gene via IID STRING

Gene Ontology (GO) - Biological Process for C10orf82 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf82 Gene

Transcripts for C10orf82 Gene

Unigene Clusters for C10orf82 Gene

Chromosome 10 open reading frame 82:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf82 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d
SP1: - - -
SP2: - - -
SP3: - -
SP4:
SP5:

Relevant External Links for C10orf82 Gene

GeneLoc Exon Structure for
C10orf82
ECgene alternative splicing isoforms for
C10orf82

Expression for C10orf82 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C10orf82 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C10orf82 Gene

This gene is overexpressed in Testis (x31.6) and Nerve - Tibial (x4.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf82 Gene



Protein tissue co-expression partners for C10orf82 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C10orf82 Gene:

C10orf82

SOURCE GeneReport for Unigene cluster for C10orf82 Gene:

Hs.121347
genes like me logo Genes that share expression patterns with C10orf82: view

Primer Products

No data available for Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf82 Gene

Orthologs for C10orf82 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C10orf82 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf82 34
  • 99.13 (n)
C10orf82 35
  • 66 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C26H10orf82 34
  • 82.47 (n)
C10orf82 35
  • 49 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C28H10orf82 34
  • 81.48 (n)
C10orf82 35
  • 48 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700019N19Rik 16 35 34
  • 76.62 (n)
rat
(Rattus norvegicus)
Mammalia LOC681006 34
  • 75.11 (n)
oppossum
(Monodelphis domestica)
Mammalia C10orf82 35
  • 34 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf82 35
  • 33 (a)
OneToOne
Species where no ortholog for C10orf82 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf82 Gene

ENSEMBL:
Gene Tree for C10orf82 (if available)
TreeFam:
Gene Tree for C10orf82 (if available)

Paralogs for C10orf82 Gene

No data available for Paralogs for C10orf82 Gene

Variants for C10orf82 Gene

Sequence variations from dbSNP and Humsavar for C10orf82 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000145952 -- 116,662,262(+) TGAGA(C/G)AGTAG downstream-variant-500B, utr-variant-3-prime
rs1000990091 -- 116,668,106(+) TTCAG(C/T)GATGG intron-variant, upstream-variant-2KB
rs1002321136 -- 116,662,761(+) CATGA(A/C)AGTCC intron-variant
rs1002344527 -- 116,669,216(+) AAGAA(A/T)TGCCT intron-variant, upstream-variant-2KB
rs1002374092 -- 116,668,914(+) CCCCC(A/C)ACCCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C10orf82 Gene

Variant ID Type Subtype PubMed ID
esv3624662 CNV gain 21293372

Variation tolerance for C10orf82 Gene

Residual Variation Intolerance Score: 78.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.89; 35.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C10orf82 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf82 Gene

Disorders for C10orf82 Gene

Relevant External Links for C10orf82

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf82

No disorders were found for C10orf82 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf82 Gene

Publications for C10orf82 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  4. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 3 64
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for C10orf82 Gene

Sources for C10orf82 Gene

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