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Aliases for C10orf82 Gene

Aliases for C10orf82 Gene

  • Chromosome 10 Open Reading Frame 82 2 3

External Ids for C10orf82 Gene

Previous GeneCards Identifiers for C10orf82 Gene

  • GC10M118088
  • GC10M118413
  • GC10M112051

Summaries for C10orf82 Gene

GeneCards Summary for C10orf82 Gene

C10orf82 (Chromosome 10 Open Reading Frame 82) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf82 Gene

Genomics for C10orf82 Gene

Regulatory Elements for C10orf82 Gene

Genomic Location for C10orf82 Gene

Chromosome:
10
Start:
116,662,211 bp from pter
End:
116,670,269 bp from pter
Size:
8,059 bases
Orientation:
Minus strand

Genomic View for C10orf82 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf82 Gene

Proteins for C10orf82 Gene

  • Protein details for C10orf82 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WW14-CJ082_HUMAN
    Recommended name:
    Uncharacterized protein C10orf82
    Protein Accession:
    Q8WW14
    Secondary Accessions:
    • B3KUM9
    • D3DRC3

    Protein attributes for C10orf82 Gene

    Size:
    230 amino acids
    Molecular mass:
    25923 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C10orf82 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C10orf82 Gene

Proteomics data for C10orf82 Gene at MOPED

Post-translational modifications for C10orf82 Gene

No Post-translational modifications

Other Protein References for C10orf82 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf82 Gene

Domains & Families for C10orf82 Gene

Protein Domains for C10orf82 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf82: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf82 Gene

Function for C10orf82 Gene

Phenotypes for C10orf82 Gene

GenomeRNAi human phenotypes for C10orf82:
genes like me logo Genes that share phenotypes with C10orf82: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf82

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf82 Gene

Localization for C10orf82 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C10orf82 Gene

Pathways & Interactions for C10orf82 Gene

SuperPathways for C10orf82 Gene

No Data Available

Interacting Proteins for C10orf82 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000358212%0d%0a9606.ENSP00000340995%0d%0a
Selected Interacting proteins: ENSP00000358212 Q8WW14-CJ082_HUMAN for C10orf82 Gene via STRING MINT I2D

Gene Ontology (GO) - Biological Process for C10orf82 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf82 Gene

Drugs & Compounds for C10orf82 Gene

No Compound Related Data Available

Transcripts for C10orf82 Gene

Unigene Clusters for C10orf82 Gene

Chromosome 10 open reading frame 82:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf82

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf82 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d
SP1: - - -
SP2: - - -
SP3: - -
SP4:
SP5:

Relevant External Links for C10orf82 Gene

GeneLoc Exon Structure for
C10orf82
ECgene alternative splicing isoforms for
C10orf82

Expression for C10orf82 Gene

mRNA expression in normal human tissues for C10orf82 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C10orf82 Gene

This gene is overexpressed in Testis (x31.6) and Nerve - Tibial (x4.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf82 Gene



SOURCE GeneReport for Unigene cluster for C10orf82 Gene Hs.121347

genes like me logo Genes that share expression patterns with C10orf82: view

Protein tissue co-expression partners for C10orf82 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C10orf82 Gene

Orthologs for C10orf82 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C10orf82 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C26H10orf82 35
  • 82.47 (n)
  • 74.68 (a)
C10orf82 36
  • 49 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C28H10orf82 35
  • 81.48 (n)
  • 73.2 (a)
C10orf82 36
  • 48 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700019N19Rik 35
  • 76.62 (n)
  • 70.13 (a)
1700019N19Rik 16
1700019N19Rik 36
  • 46 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf82 35
  • 99.13 (n)
  • 98.7 (a)
C10orf82 36
  • 66 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC681006 35
  • 75.11 (n)
  • 68.83 (a)
oppossum
(Monodelphis domestica)
Mammalia C10orf82 36
  • 34 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf82 36
  • 33 (a)
OneToOne
Species with no ortholog for C10orf82:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf82 Gene

ENSEMBL:
Gene Tree for C10orf82 (if available)
TreeFam:
Gene Tree for C10orf82 (if available)

Paralogs for C10orf82 Gene

No data available for Paralogs for C10orf82 Gene

Variants for C10orf82 Gene

Sequence variations from dbSNP and Humsavar for C10orf82 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs11551267 - 116,664,851(+) ATCTC(A/G/T)TGCCA reference, missense
rs779321163 -- 116,666,792(+) ATCAG(G/T)GCCGA intron-variant
rs776502114 -- 116,663,527(+) GTGGT(A/G)TCTGC downstream-variant-500B, intron-variant
rs774247147 -- 116,668,071(+) AAGTT(C/T)TGCCC intron-variant
rs772940058 -- 116,666,211(+) CTCGA(C/T)ACTTC intron-variant

Variation tolerance for C10orf82 Gene

Residual Variation Intolerance Score: 78.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.89; 35.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C10orf82 Gene

HapMap Linkage Disequilibrium report
C10orf82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C10orf82 Gene

Disorders for C10orf82 Gene

Relevant External Links for C10orf82

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf82
genes like me logo Genes that share disorders with C10orf82: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf82 Gene

Publications for C10orf82 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 67
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 67
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 67
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

Products for C10orf82 Gene

Sources for C10orf82 Gene

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