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Aliases for C10orf71-AS1 Gene

Subcategory (RNA class) for C10orf71-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C10orf71-AS1 Gene

  • C10orf71 Antisense RNA 1 2 3 5

External Ids for C10orf71-AS1 Gene

Previous GeneCards Identifiers for C10orf71-AS1 Gene

  • GC10M050506

Summaries for C10orf71-AS1 Gene

GeneCards Summary for C10orf71-AS1 Gene

C10orf71-AS1 (C10orf71 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C10orf71-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf71-AS1 Gene

Genomics for C10orf71-AS1 Gene

Regulatory Elements for C10orf71-AS1 Gene

Enhancers for C10orf71-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H049270 1.2 FANTOM5 Ensembl ENCODE dbSUPER 16.4 +26.6 26626 3 NR2F2 C10orf71 C10orf71-AS1 C10orf128 DRGX GC10P049274
GH10H049205 1.2 VISTA 10.5 +93.2 93187 0 DRGX C10orf71-AS1 C10orf71 C10orf128 GC10P049274
GH10H049023 0.8 Ensembl ENCODE 9.3 +274.4 274395 2 TFAP4 NR2F1 HNF4A NR2F6 VSTM4 ENSG00000226576 FAM170B-AS1 C10orf71-AS1 C10orf71 LOC105378298 GC10M049015 PIR36323
GH10H049321 0.4 dbSUPER 17 -24.4 -24369 2 CTCF RAD21 C10orf71-AS1 C10orf71 C10orf128 DRGX GC10M049333
GH10H049253 1.3 FANTOM5 Ensembl ENCODE 4.6 +44.4 44439 1 BCOR HDGF MCM3 MTA2 TSC22D4 CDC5L ZNF48 MEF2D NONO DIDO1 LINC00843 WASHC2A RNA5SP317 ERCC6 C10orf128 C10orf71-AS1 VSTM4 GC10P049274
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C10orf71-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for C10orf71-AS1 Gene

Chromosome:
10
Start:
49,296,112 bp from pter
End:
49,299,018 bp from pter
Size:
2,907 bases
Orientation:
Minus strand

Genomic View for C10orf71-AS1 Gene

Genes around C10orf71-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf71-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf71-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf71-AS1 Gene

Proteins for C10orf71-AS1 Gene

Post-translational modifications for C10orf71-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C10orf71-AS1 Gene

Domains & Families for C10orf71-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf71-AS1 Gene

Function for C10orf71-AS1 Gene

Phenotypes From GWAS Catalog for C10orf71-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf71-AS1 Gene

Localization for C10orf71-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C10orf71-AS1 Gene

Pathways & Interactions for C10orf71-AS1 Gene

SuperPathways for C10orf71-AS1 Gene

No Data Available

Interacting Proteins for C10orf71-AS1 Gene

Gene Ontology (GO) - Biological Process for C10orf71-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf71-AS1 Gene

Drugs & Compounds for C10orf71-AS1 Gene

No Compound Related Data Available

Transcripts for C10orf71-AS1 Gene

mRNA/cDNA for C10orf71-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf71-AS1 Gene

C10orf71 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf71-AS1 Gene

No ASD Table

Relevant External Links for C10orf71-AS1 Gene

GeneLoc Exon Structure for
C10orf71-AS1
ECgene alternative splicing isoforms for
C10orf71-AS1

Expression for C10orf71-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C10orf71-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf71-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x24.2), Heart - Left Ventricle (x17.4), and Heart - Atrial Appendage (x9.3).

SOURCE GeneReport for Unigene cluster for C10orf71-AS1 Gene:

Hs.562293
genes like me logo Genes that share expression patterns with C10orf71-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf71-AS1 Gene

Orthologs for C10orf71-AS1 Gene

Evolution for C10orf71-AS1 Gene

ENSEMBL:
Gene Tree for C10orf71-AS1 (if available)
TreeFam:
Gene Tree for C10orf71-AS1 (if available)

No data available for Orthologs for C10orf71-AS1 Gene

Paralogs for C10orf71-AS1 Gene

No data available for Paralogs for C10orf71-AS1 Gene

Variants for C10orf71-AS1 Gene

Sequence variations from dbSNP and Humsavar for C10orf71-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000552214 -- 49,296,322(+) GTGCG(C/G)CAAGG nc-transcript-variant, upstream-variant-2KB
rs1001441046 -- 49,297,692(+) GTAAG(A/T)ATGTG intron-variant, upstream-variant-2KB
rs1002579456 -- 49,299,875(+) ACAAA(A/G)AGAAA intron-variant, upstream-variant-2KB
rs1003146887 -- 49,299,245(+) TTCGC(G/T)GACTT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1003447901 -- 49,300,260(+) TCTGA(A/G)CATCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C10orf71-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1042677 CNV loss 25217958

Relevant External Links for C10orf71-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf71-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C10orf71-AS1 Gene

Disorders for C10orf71-AS1 Gene

Relevant External Links for C10orf71-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf71-AS1

No disorders were found for C10orf71-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf71-AS1 Gene

Publications for C10orf71-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for C10orf71-AS1 Gene

Sources for C10orf71-AS1 Gene

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