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Aliases for C10orf71 Gene

Aliases for C10orf71 Gene

  • Chromosome 10 Open Reading Frame 71 2 3

External Ids for C10orf71 Gene

Summaries for C10orf71 Gene

GeneCards Summary for C10orf71 Gene

C10orf71 (Chromosome 10 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf71 Gene

Genomics for C10orf71 Gene

Genomic Location for C10orf71 Gene

Start:
49,297,081 bp from pter
End:
49,327,492 bp from pter
Size:
30,412 bases
Orientation:
Plus strand

Genomic View for C10orf71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf71 Gene

Regulatory Elements for C10orf71 Gene

Proteins for C10orf71 Gene

  • Protein details for C10orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q711Q0-CJ071_HUMAN
    Recommended name:
    Uncharacterized protein C10orf71
    Protein Accession:
    Q711Q0
    Secondary Accessions:
    • A0AVL8

    Protein attributes for C10orf71 Gene

    Size:
    1435 amino acids
    Molecular mass:
    156477 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAC85340.1; Type=Frameshift; Positions=1282, 1418; Evidence={ECO:0000305};

    Alternative splice isoforms for C10orf71 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C10orf71 Gene

Proteomics data for C10orf71 Gene at MOPED

Post-translational modifications for C10orf71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf71 Gene

Domains for C10orf71 Gene

Protein Domains for C10orf71 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C10orf71: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C10orf71 Gene

Function for C10orf71 Gene

miRNA for C10orf71 Gene

miRTarBase miRNAs that target C10orf71

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C10orf71 Gene

Localization for C10orf71 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf71 Gene COMPARTMENTS Subcellular localization image for C10orf71 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Gene Ontology (GO) - Cellular Components for C10orf71 Gene

Pathways for C10orf71 Gene

SuperPathways for C10orf71 Gene

No Data Available

Interacting Proteins for C10orf71 Gene

Gene Ontology (GO) - Biological Process for C10orf71 Gene

None

No data available for Pathways by source for C10orf71 Gene

Transcripts for C10orf71 Gene

mRNA/cDNA for C10orf71 Gene

(6) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf71 Gene

Chromosome 10 open reading frame 71:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf71 Gene

No ASD Table

Relevant External Links for C10orf71 Gene

GeneLoc Exon Structure for
C10orf71
ECgene alternative splicing isoforms for
C10orf71

Expression for C10orf71 Gene

mRNA expression in normal human tissues for C10orf71 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf71 Gene

This gene is overexpressed in Muscle - Skeletal (35.1), Heart - Left Ventricle (12.2), and Heart - Atrial Appendage (4.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C10orf71 Gene

SOURCE GeneReport for Unigene cluster for C10orf71 Gene Hs.585480

genes like me logo Genes that share expressions with C10orf71: view

Orthologs for C10orf71 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf71 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf71 36
  • 98.94 (n)
  • 98.41 (a)
C10orf71 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C10orf71 37
  • 72 (a)
OneToOne
C28H10orf71 36
  • 79.52 (n)
  • 72.16 (a)
dog
(Canis familiaris)
Mammalia C10orf71 37
  • 73 (a)
OneToOne
C28H10orf71 36
  • 80.72 (n)
  • 74.12 (a)
mouse
(Mus musculus)
Mammalia 3425401B19Rik 36
  • 75.39 (n)
  • 67.4 (a)
3425401B19Rik 16
3425401B19Rik 37
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C10orf71 37
  • 47 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 51 (a)
OneToMany
-- 37
  • 39 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1564899 36
  • 75.8 (n)
  • 68.06 (a)
chicken
(Gallus gallus)
Aves C10orf71 37
  • 30 (a)
OneToOne
C6H10ORF71 36
  • 50.37 (n)
  • 36.26 (a)
lizard
(Anolis carolinensis)
Reptilia C10orf71 37
  • 30 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C10orf71 (1 of 2) 37
  • 13 (a)
OneToMany
C10orf71 (2 of 2) 37
  • 10 (a)
OneToMany
Species with no ortholog for C10orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf71 Gene

ENSEMBL:
Gene Tree for C10orf71 (if available)
TreeFam:
Gene Tree for C10orf71 (if available)

Paralogs for C10orf71 Gene

No data available for Paralogs for C10orf71 Gene

Variants for C10orf71 Gene

Sequence variations from dbSNP and Humsavar for C10orf71 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs870369 -- 49,309,149(+) TGAAG(A/G)ACTTC intron-variant
rs2377940 -- 49,325,572(+) GAGGG(C/T)GACAT synonymous-codon, reference
rs2377963 -- 49,311,211(-) GTCCA(C/T)AGGAC intron-variant
rs2377964 -- 49,303,104(-) ATAGG(C/T)CCAAG intron-variant
rs2377965 -- 49,302,477(-) GTCTG(A/C)AGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf71 Gene

Variant ID Type Subtype PubMed ID
nsv7203 OTHER Inversion 18451855
nsv895365 CNV Loss 21882294
nsv895369 CNV Gain 21882294
nsv895375 CNV Gain 21882294
nsv895376 CNV Gain 21882294
esv2736529 CNV Deletion 23290073
esv2255118 CNV Deletion 18987734
esv2736540 CNV Deletion 23290073

Relevant External Links for C10orf71 Gene

HapMap Linkage Disequilibrium report
C10orf71

Disorders for C10orf71 Gene

Relevant External Links for C10orf71

Genetic Association Database (GAD)
C10orf71
genes like me logo Genes that share disorders with C10orf71: view

No data available for UniProtKB/Swiss-Prot for C10orf71 Gene

Publications for C10orf71 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium. (PMID: 23362303) Wu J.H. … Mozaffarian D. (Circ Cardiovasc Genet 2013) 3
  4. Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 24823311) Guan W. … Steffen L.M. (Circ Cardiovasc Genet 2014) 3
  5. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 49

Products for C10orf71 Gene

Sources for C10orf71 Gene

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