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Aliases for C10orf71 Gene

Aliases for C10orf71 Gene

  • Chromosome 10 Open Reading Frame 71 2 3

External Ids for C10orf71 Gene

Previous GeneCards Identifiers for C10orf71 Gene

  • GC10P049851
  • GC10P050177
  • GC10P050507
  • GC10P044771

Summaries for C10orf71 Gene

GeneCards Summary for C10orf71 Gene

C10orf71 (Chromosome 10 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf71 Gene

Genomics for C10orf71 Gene

Regulatory Elements for C10orf71 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C10orf71 Gene

49,297,081 bp from pter
49,327,492 bp from pter
30,412 bases
Plus strand

Genomic View for C10orf71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf71 Gene

Proteins for C10orf71 Gene

  • Protein details for C10orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C10orf71
    Protein Accession:
    Secondary Accessions:
    • A0AVL8

    Protein attributes for C10orf71 Gene

    1435 amino acids
    Molecular mass:
    156477 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAC85340.1; Type=Frameshift; Positions=1282, 1418; Evidence={ECO:0000305};

    Alternative splice isoforms for C10orf71 Gene


neXtProt entry for C10orf71 Gene

Proteomics data for C10orf71 Gene at MOPED

Post-translational modifications for C10orf71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for C10orf71 Gene

Domains for C10orf71 Gene

Protein Domains for C10orf71 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf71: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf71 Gene

Function for C10orf71 Gene

Animal Model Products

CRISPR Products

miRNA for C10orf71 Gene

miRTarBase miRNAs that target C10orf71

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf71

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C10orf71 Gene

Localization for C10orf71 Gene

Subcellular locations from

Jensen Localization Image for C10orf71 Gene COMPARTMENTS Subcellular localization image for C10orf71 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf71 Gene

Pathways for C10orf71 Gene

SuperPathways for C10orf71 Gene

No Data Available

Interacting Proteins for C10orf71 Gene

Gene Ontology (GO) - Biological Process for C10orf71 Gene


No data available for Pathways by source for C10orf71 Gene

Transcripts for C10orf71 Gene

mRNA/cDNA for C10orf71 Gene

(6) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf71 Gene

Chromosome 10 open reading frame 71:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf71

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf71 Gene

No ASD Table

Relevant External Links for C10orf71 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C10orf71 Gene

mRNA expression in normal human tissues for C10orf71 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf71 Gene

This gene is overexpressed in Muscle - Skeletal (35.1), Heart - Left Ventricle (12.2), and Heart - Atrial Appendage (4.2).

Protein differential expression in normal tissues for C10orf71 Gene

This gene is overexpressed in Liver, secretome (49.5) and Breast (17.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C10orf71 Gene

SOURCE GeneReport for Unigene cluster for C10orf71 Gene Hs.585480

genes like me logo Genes that share expressions with C10orf71: view

Expression partners for C10orf71 Gene

* - Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C10orf71 Gene

Orthologs for C10orf71 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf71 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C28H10orf71 35
  • 79.52 (n)
  • 72.16 (a)
C10orf71 36
  • 72 (a)
(Canis familiaris)
Mammalia C28H10orf71 35
  • 80.72 (n)
  • 74.12 (a)
C10orf71 36
  • 73 (a)
(Mus musculus)
Mammalia 3425401B19Rik 35
  • 75.39 (n)
  • 67.4 (a)
3425401B19Rik 16
3425401B19Rik 36
  • 66 (a)
(Pan troglodytes)
Mammalia C10H10orf71 35
  • 98.94 (n)
  • 98.41 (a)
C10orf71 36
  • 97 (a)
(Rattus norvegicus)
Mammalia RGD1564899 35
  • 75.8 (n)
  • 68.06 (a)
(Monodelphis domestica)
Mammalia C10orf71 36
  • 47 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 51 (a)
-- 36
  • 39 (a)
(Gallus gallus)
Aves C6H10ORF71 35
  • 50.37 (n)
  • 36.26 (a)
C10orf71 36
  • 30 (a)
(Anolis carolinensis)
Reptilia C10orf71 36
  • 30 (a)
(Danio rerio)
Actinopterygii C10orf71 (1 of 2) 36
  • 13 (a)
C10orf71 (2 of 2) 36
  • 10 (a)
Species with no ortholog for C10orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf71 Gene

Gene Tree for C10orf71 (if available)
Gene Tree for C10orf71 (if available)

Paralogs for C10orf71 Gene

No data available for Paralogs for C10orf71 Gene

Variants for C10orf71 Gene

Sequence variations from dbSNP and Humsavar for C10orf71 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs870369 -- 49,309,149(+) TGAAG(A/G)ACTTC intron-variant
rs2377940 -- 49,325,572(+) GAGGG(C/T)GACAT synonymous-codon, reference
rs2377963 -- 49,311,211(-) GTCCA(C/T)AGGAC intron-variant
rs2377964 -- 49,303,104(-) ATAGG(C/T)CCAAG intron-variant
rs2377965 -- 49,302,477(-) GTCTG(A/C)AGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf71 Gene

Variant ID Type Subtype PubMed ID
nsv7203 OTHER Inversion 18451855
nsv895365 CNV Loss 21882294
nsv895369 CNV Gain 21882294
nsv895375 CNV Gain 21882294
nsv895376 CNV Gain 21882294
esv2736529 CNV Deletion 23290073
esv2255118 CNV Deletion 18987734
esv2736540 CNV Deletion 23290073

Relevant External Links for C10orf71 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf71 Gene

Disorders for C10orf71 Gene

Relevant External Links for C10orf71

Genetic Association Database (GAD)

No disorders were found for C10orf71 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for C10orf71 Gene

Publications for C10orf71 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium. (PMID: 23362303) Wu J.H. … Mozaffarian D. (Circ Cardiovasc Genet 2013) 3
  4. Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 24823311) Guan W. … Steffen L.M. (Circ Cardiovasc Genet 2014) 3
  5. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 48

Products for C10orf71 Gene

Sources for C10orf71 Gene

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