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Aliases for C10orf62 Gene

Aliases for C10orf62 Gene

  • Chromosome 10 Open Reading Frame 62 2 3 5
  • BA548K23.1 3

External Ids for C10orf62 Gene

Previous GeneCards Identifiers for C10orf62 Gene

  • GC10U900455
  • GC10P099339
  • GC10P099349
  • GC10P092975

Summaries for C10orf62 Gene

GeneCards Summary for C10orf62 Gene

C10orf62 (Chromosome 10 Open Reading Frame 62) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf62 Gene

Genomics for C10orf62 Gene

Regulatory Elements for C10orf62 Gene

Enhancers for C10orf62 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C10orf62 on UCSC Golden Path with GeneCards custom track

Genomic Location for C10orf62 Gene

Chromosome:
10
Start:
97,589,693 bp from pter
End:
97,590,934 bp from pter
Size:
1,242 bases
Orientation:
Plus strand

Genomic View for C10orf62 Gene

Genes around C10orf62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf62 Gene

Proteins for C10orf62 Gene

  • Protein details for C10orf62 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T681-CJ062_HUMAN
    Recommended name:
    Uncharacterized protein C10orf62
    Protein Accession:
    Q5T681
    Secondary Accessions:
    • Q49A70
    • Q8N3Y6

    Protein attributes for C10orf62 Gene

    Size:
    223 amino acids
    Molecular mass:
    25128 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf62 Gene

Proteomics data for C10orf62 Gene at MOPED

Post-translational modifications for C10orf62 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf62 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf62 Gene

Domains & Families for C10orf62 Gene

Protein Domains for C10orf62 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf62: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf62 Gene

Function for C10orf62 Gene

Phenotypes for C10orf62 Gene

GenomeRNAi human phenotypes for C10orf62:
genes like me logo Genes that share phenotypes with C10orf62: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf62 Gene

Localization for C10orf62 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf62 Gene COMPARTMENTS Subcellular localization image for C10orf62 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf62 Gene

Pathways & Interactions for C10orf62 Gene

SuperPathways for C10orf62 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C10orf62 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf62 Gene

Drugs & Compounds for C10orf62 Gene

No Compound Related Data Available

Transcripts for C10orf62 Gene

mRNA/cDNA for C10orf62 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf62 Gene

Chromosome 10 open reading frame 62:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf62 Gene

No ASD Table

Relevant External Links for C10orf62 Gene

GeneLoc Exon Structure for
C10orf62
ECgene alternative splicing isoforms for
C10orf62

Expression for C10orf62 Gene

mRNA expression in normal human tissues for C10orf62 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf62 Gene

This gene is overexpressed in Testis (x51.2).

Protein differential expression in normal tissues from HIPED for C10orf62 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf62 Gene



SOURCE GeneReport for Unigene cluster for C10orf62 Gene Hs.662302

genes like me logo Genes that share expression patterns with C10orf62: view

Protein tissue co-expression partners for C10orf62 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C10orf62 Gene

Orthologs for C10orf62 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C10orf62 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C26H10orf62 35
  • 77.78 (n)
  • 67.58 (a)
dog
(Canis familiaris)
Mammalia C28H10orf62 35
  • 78.84 (n)
  • 68.95 (a)
C10orf62 36
  • 68 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4933411K16Rik 35
  • 70.1 (n)
  • 56.19 (a)
4933411K16Rik 16
4933411K16Rik 36
  • 40 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf62 35
  • 98.95 (n)
  • 98.21 (a)
rat
(Rattus norvegicus)
Mammalia MGC93861 35
  • 70.27 (n)
  • 57.22 (a)
oppossum
(Monodelphis domestica)
Mammalia C10orf62 36
  • 44 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf62 36
  • 41 (a)
OneToOne
Species with no ortholog for C10orf62:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf62 Gene

ENSEMBL:
Gene Tree for C10orf62 (if available)
TreeFam:
Gene Tree for C10orf62 (if available)

Paralogs for C10orf62 Gene

No data available for Paralogs for C10orf62 Gene

Variants for C10orf62 Gene

Sequence variations from dbSNP and Humsavar for C10orf62 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
VAR_030216 -

Structural Variations from Database of Genomic Variants (DGV) for C10orf62 Gene

Variant ID Type Subtype PubMed ID
nsv818782 CNV Loss 17921354

Variation tolerance for C10orf62 Gene

Residual Variation Intolerance Score: 89.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.51; 82.26% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C10orf62 Gene

Disorders for C10orf62 Gene

Relevant External Links for C10orf62

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf62

No disorders were found for C10orf62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf62 Gene

Publications for C10orf62 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K. … Vidal M. (Nat. Methods 2009) 3
  4. Shifted Transversal Design smart-pooling for high coverage interactome mapping. (PMID: 19447967) Xin X. … Thierry-Mieg N. (Genome Res. 2009) 3
  5. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3

Products for C10orf62 Gene

Sources for C10orf62 Gene

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