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Aliases for C10orf55 Gene

Aliases for C10orf55 Gene

  • Chromosome 10 Open Reading Frame 55 2 3 5
  • BA417O11.3 3

External Ids for C10orf55 Gene

Previous GeneCards Identifiers for C10orf55 Gene

  • GC10U900528
  • GC10M075340
  • GC10M075669
  • GC10M069664

Summaries for C10orf55 Gene

GeneCards Summary for C10orf55 Gene

C10orf55 (Chromosome 10 Open Reading Frame 55) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf55 Gene

Genomics for C10orf55 Gene

Regulatory Elements for C10orf55 Gene

Enhancers for C10orf55 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C10orf55 on UCSC Golden Path with GeneCards custom track

Genomic Location for C10orf55 Gene

Chromosome:
10
Start:
73,909,969 bp from pter
End:
73,922,777 bp from pter
Size:
12,809 bases
Orientation:
Minus strand

Genomic View for C10orf55 Gene

Genes around C10orf55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf55 Gene

Proteins for C10orf55 Gene

  • Protein details for C10orf55 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SWW7-CJ055_HUMAN
    Recommended name:
    Uncharacterized protein C10orf55
    Protein Accession:
    Q5SWW7
    Secondary Accessions:
    • Q3KRG4
    • Q8NAK4

    Protein attributes for C10orf55 Gene

    Size:
    151 amino acids
    Molecular mass:
    16057 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC03908.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C10orf55 Gene

Proteomics data for C10orf55 Gene at MOPED

Post-translational modifications for C10orf55 Gene

No Post-translational modifications

Other Protein References for C10orf55 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf55 Gene

Domains & Families for C10orf55 Gene

Protein Domains for C10orf55 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf55: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf55 Gene

Function for C10orf55 Gene

genes like me logo Genes that share phenotypes with C10orf55: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C10orf55 Gene

Localization for C10orf55 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf55 Gene COMPARTMENTS Subcellular localization image for C10orf55 gene
Compartment Confidence
nucleus 3
cytosol 2
extracellular 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf55 Gene

Pathways & Interactions for C10orf55 Gene

SuperPathways for C10orf55 Gene

No Data Available

Interacting Proteins for C10orf55 Gene

Gene Ontology (GO) - Biological Process for C10orf55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf55 Gene

Drugs & Compounds for C10orf55 Gene

No Compound Related Data Available

Transcripts for C10orf55 Gene

mRNA/cDNA for C10orf55 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf55 Gene

Chromosome 10 open reading frame 55:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf55 Gene

No ASD Table

Relevant External Links for C10orf55 Gene

GeneLoc Exon Structure for
C10orf55
ECgene alternative splicing isoforms for
C10orf55

Expression for C10orf55 Gene

mRNA expression in normal human tissues for C10orf55 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf55 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for C10orf55 Gene Hs.585453

genes like me logo Genes that share expression patterns with C10orf55: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C10orf55 Gene

Orthologs for C10orf55 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C10orf55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf55 35
  • 98.9 (n)
  • 96.69 (a)
C10orf55 36
  • 97 (a)
OneToOne
Species with no ortholog for C10orf55:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf55 Gene

ENSEMBL:
Gene Tree for C10orf55 (if available)
TreeFam:
Gene Tree for C10orf55 (if available)

Paralogs for C10orf55 Gene

No data available for Paralogs for C10orf55 Gene

Variants for C10orf55 Gene

Sequence variations from dbSNP and Humsavar for C10orf55 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs2227575 -- 73,918,082(+) ggatc(A/C)taagc intron-variant
rs2227576 -- 73,918,518(+) ataaa(G/T)aaaga intron-variant
rs2227577 -- 73,918,522(+) AGAAA(G/T)AAAGA intron-variant
rs2227578 -- 73,918,957(+) CCCTC(A/G)GTGTT intron-variant
rs2227584 -- 73,918,022(+) attag(C/T)caggt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf55 Gene

Variant ID Type Subtype PubMed ID
nsv825468 CNV Gain 20364138
dgv46n21 CNV Loss 19592680
nsv521018 CNV Gain 19592680

Variation tolerance for C10orf55 Gene

Gene Damage Index Score: 1.41; 27.78% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C10orf55 Gene

HapMap Linkage Disequilibrium report
C10orf55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf55 Gene

Disorders for C10orf55 Gene

Relevant External Links for C10orf55

Genetic Association Database (GAD)
C10orf55
Human Genome Epidemiology (HuGE) Navigator
C10orf55
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf55

No disorders were found for C10orf55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf55 Gene

Publications for C10orf55 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. (PMID: 23128233) Jostins L. … Cho J.H. (Nature 2012) 3
  4. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3
  5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3

Products for C10orf55 Gene

Sources for C10orf55 Gene

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