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Aliases for C10orf55 Gene

Aliases for C10orf55 Gene

  • Chromosome 10 Open Reading Frame 55 2 3 5
  • Uncharacterized Protein C10orf55 3
  • BA417O11.3 3

External Ids for C10orf55 Gene

Previous GeneCards Identifiers for C10orf55 Gene

  • GC10U900528
  • GC10M075340
  • GC10M075669
  • GC10M069664

Summaries for C10orf55 Gene

GeneCards Summary for C10orf55 Gene

C10orf55 (Chromosome 10 Open Reading Frame 55) is a Protein Coding gene.

Additional gene information for C10orf55 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf55 Gene

Genomics for C10orf55 Gene

Regulatory Elements for C10orf55 Gene

Enhancers for C10orf55 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H073964 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 11.7 -44.4 -44423 6 PKNOX1 SIN3A FEZF1 ZNF2 ETS1 GTF3C2 GLIS2 ATF7 FOS SP3 SEC24C GLUD1P3 ENSG00000272140 DUSP8P5 BMS1P4 AP3M1 ENSG00000242288 ECD ZSWIM8 RPL17P50
GH10H073886 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.8 +31.8 31768 10 HDGF PKNOX1 FOXA2 SIN3A ZNF2 ZNF121 GLIS2 GATA2 ZNF143 ZNF207 NDST2 ENSG00000272791 ENSG00000268584 AGAP5 ENSG00000227540 C10orf55 FUT11 ENSG00000229990 ENSG00000272599 ENSG00000224195
GH10H073878 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12 +43.2 43162 1 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 CBX5 PLAU ENSG00000229990 C10orf55 VCL MYOZ1 FUT11 NDST2 CAMK2G
GH10H073955 1.6 FANTOM5 Ensembl ENCODE 12 -35.5 -35503 4 PKNOX1 ARNT YBX1 ZNF766 ZNF143 JUNB REST ZNF592 MEF2D SMARCA4 VCL PLAU C10orf55 NDST2 ADK ANXA7 CFAP70 FUT11 GC10M073941
GH10H073863 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +56.9 56885 4 CTCF KLF1 ZBTB40 ZNF121 ZNF316 CTBP1 POLR2A EED ETV6 RUNX3 MYOZ1 NDST2 ENSG00000224195 ENSG00000229990 C10orf55 CAMK2G FUT11 ZSWIM8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C10orf55 on UCSC Golden Path with GeneCards custom track

Genomic Location for C10orf55 Gene

Chromosome:
10
Start:
73,909,969 bp from pter
End:
73,922,777 bp from pter
Size:
12,809 bases
Orientation:
Minus strand

Genomic View for C10orf55 Gene

Genes around C10orf55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf55 Gene

Proteins for C10orf55 Gene

  • Protein details for C10orf55 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SWW7-CJ055_HUMAN
    Recommended name:
    Uncharacterized protein C10orf55
    Protein Accession:
    Q5SWW7
    Secondary Accessions:
    • Q3KRG4
    • Q8NAK4

    Protein attributes for C10orf55 Gene

    Size:
    151 amino acids
    Molecular mass:
    16057 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC03908.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C10orf55 Gene

Post-translational modifications for C10orf55 Gene

No Post-translational modifications

Other Protein References for C10orf55 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf55 Gene

Domains & Families for C10orf55 Gene

Gene Families for C10orf55 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C10orf55 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf55: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf55 Gene

Function for C10orf55 Gene

Phenotypes From GWAS Catalog for C10orf55 Gene

genes like me logo Genes that share phenotypes with C10orf55: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C10orf55
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C10orf55 Gene

Localization for C10orf55 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C10orf55 gene
Compartment Confidence
nucleus 3
cytosol 2
plasma membrane 1
extracellular 1
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf55 Gene

Pathways & Interactions for C10orf55 Gene

SuperPathways for C10orf55 Gene

No Data Available

Interacting Proteins for C10orf55 Gene

Selected Interacting proteins: Q5SWW7-CJ055_HUMAN for C10orf55 Gene via UniProtKB IID

Gene Ontology (GO) - Biological Process for C10orf55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf55 Gene

Drugs & Compounds for C10orf55 Gene

No Compound Related Data Available

Transcripts for C10orf55 Gene

mRNA/cDNA for C10orf55 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf55 Gene

Chromosome 10 open reading frame 55:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for C10orf55
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf55 Gene

No ASD Table

Relevant External Links for C10orf55 Gene

GeneLoc Exon Structure for
C10orf55
ECgene alternative splicing isoforms for
C10orf55

Expression for C10orf55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C10orf55 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf55 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of C10orf55 Gene:

C10orf55

SOURCE GeneReport for Unigene cluster for C10orf55 Gene:

Hs.585453
genes like me logo Genes that share expression patterns with C10orf55: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C10orf55 Gene

Orthologs for C10orf55 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C10orf55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf55 33
  • 98.9 (n)
C10orf55 34
  • 97 (a)
OneToOne
Species where no ortholog for C10orf55 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf55 Gene

ENSEMBL:
Gene Tree for C10orf55 (if available)
TreeFam:
Gene Tree for C10orf55 (if available)

Paralogs for C10orf55 Gene

No data available for Paralogs for C10orf55 Gene

Variants for C10orf55 Gene

Sequence variations from dbSNP and Humsavar for C10orf55 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs140559980 Likely benign 73,916,920(+) TGAGG(C/T)CCATG intron-variant, utr-variant-3-prime
rs142059320 Likely benign 73,912,291(+) TGCCC(A/G)AAGAA intron-variant, reference, synonymous-codon, utr-variant-5-prime
rs142117323 Likely benign 73,916,625(+) GCAGT(A/C)GAGTC utr-variant-3-prime, utr-variant-5-prime
rs145634997 Likely benign 73,917,009(+) GCGGT(A/T)TGGGG intron-variant, utr-variant-3-prime
rs148333167 Likely benign 73,915,372(+) GCTGA(A/C/T)CCACA intron-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for C10orf55 Gene

Variant ID Type Subtype PubMed ID
dgv46n21 CNV loss 19592680
nsv1035390 CNV loss 25217958
nsv521018 CNV gain 19592680
nsv825468 CNV gain 20364138

Variation tolerance for C10orf55 Gene

Gene Damage Index Score: 1.41; 27.78% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C10orf55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C10orf55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf55 Gene

Disorders for C10orf55 Gene

Relevant External Links for C10orf55

Genetic Association Database (GAD)
C10orf55
Human Genome Epidemiology (HuGE) Navigator
C10orf55
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf55

No disorders were found for C10orf55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf55 Gene

Publications for C10orf55 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60

Products for C10orf55 Gene

Sources for C10orf55 Gene

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