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Aliases for C10orf32-ASMT Gene

Subcategory (RNA class) for C10orf32-ASMT Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for C10orf32-ASMT Gene

  • C10orf32-ASMT Readthrough (NMD Candidate) 2 3
  • C10orf32-AS3MT 3

External Ids for C10orf32-ASMT Gene

Previous GeneCards Identifiers for C10orf32-ASMT Gene

  • GC10P104615

Summaries for C10orf32-ASMT Gene

Entrez Gene Summary for C10orf32-ASMT Gene

  • This locus represents naturally occurring read-through transcription between the neighboring C10orf32 (chromosome 10 open reading frame 32) and AS3MT (arsenic, +3 oxidation state, methyltransferase) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for C10orf32-ASMT Gene

C10orf32-ASMT (C10orf32-ASMT Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. An important paralog of this gene is C10orf32.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf32-ASMT Gene

Genomics for C10orf32-ASMT Gene

Genomic Location for C10orf32-ASMT Gene

Start:
102,854,210 bp from pter
End:
102,901,899 bp from pter
Size:
47,690 bases
Orientation:
Plus strand

Genomic View for C10orf32-ASMT Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf32-ASMT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf32-ASMT Gene

No data available for Regulatory Elements for C10orf32-ASMT Gene

Proteins for C10orf32-ASMT Gene

  • Protein details for C10orf32-ASMT Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J1R7
    Recommended name:
    Protein C10orf32-ASMT
    Protein Accession:
    A0A0B4J1R7
    Secondary Accessions:

    Protein attributes for C10orf32-ASMT Gene

    Size:
    106 amino acids
    Molecular mass:
    11695 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf32-ASMT Gene

Proteomics data for C10orf32-ASMT Gene at MOPED

Protein Expression for C10orf32-ASMT Gene

Post-translational modifications for C10orf32-ASMT Gene

No Post-translational modifications

Other Protein References for C10orf32-ASMT Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for C10orf32-ASMT Gene

Domains for C10orf32-ASMT Gene

Protein Domains for C10orf32-ASMT Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf32-ASMT: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf32-ASMT Gene

Function for C10orf32-ASMT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C10orf32-ASMT Gene

Localization for C10orf32-ASMT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C10orf32-ASMT Gene

Pathways for C10orf32-ASMT Gene

SuperPathways for C10orf32-ASMT Gene

No Data Available

Interacting Proteins for C10orf32-ASMT Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000299353%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000299353 for C10orf32-ASMT Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for C10orf32-ASMT Gene

None

No data available for Pathways by source for C10orf32-ASMT Gene

Transcripts for C10orf32-ASMT Gene

mRNA/cDNA for C10orf32-ASMT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf32-ASMT Gene

No ASD Table

Relevant External Links for C10orf32-ASMT Gene

GeneLoc Exon Structure for
C10orf32-ASMT
ECgene alternative splicing isoforms for
C10orf32-ASMT

Expression for C10orf32-ASMT Gene

Integrated Proteomics: protein expression from PaxDb for C10orf32-ASMT Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C10orf32-ASMT Gene

Orthologs for C10orf32-ASMT Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf32-ASMT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10ORF32 36
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 36
  • 96 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 82 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 2010012O05Rik 36
  • 96 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 90 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 88 (a)
OneToMany
chicken
(Gallus gallus)
Aves C6H10ORF32 36
  • 83 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 83 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii C13H10orf32 36
  • 79 (a)
OneToMany
Species with no ortholog for C10orf32-ASMT:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf32-ASMT Gene

ENSEMBL:
Gene Tree for C10orf32-ASMT (if available)
TreeFam:
Gene Tree for C10orf32-ASMT (if available)

Paralogs for C10orf32-ASMT Gene

Paralogs for C10orf32-ASMT Gene

genes like me logo Genes that share paralogs with C10orf32-ASMT: view

Variants for C10orf32-ASMT Gene

Sequence variations from dbSNP and Humsavar for C10orf32-ASMT Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs837980 -- 102,866,723(-) caggc(A/G)tgagc intron-variant
rs837981 -- 102,866,713(-) ccacc(A/G)cgccc intron-variant
rs7896406 -- 102,866,231(+) gaaat(G/T)actta intron-variant
rs10786717 -- 102,865,480(+) CACAG(A/G)GTCAG intron-variant
rs11191424 -- 102,866,129(+) GAGTC(A/G)Tataa intron-variant

Relevant External Links for C10orf32-ASMT Gene

HapMap Linkage Disequilibrium report
C10orf32-ASMT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C10orf32-ASMT Gene

Disorders for C10orf32-ASMT Gene

No disorders were found for C10orf32-ASMT Gene.

No data available for UniProtKB/Swiss-Prot for C10orf32-ASMT Gene

Publications for C10orf32-ASMT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  3. Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh. (PMID: 22383894) Pierce B.L. … Ahsan H. (PLoS Genet. 2012) 3
  4. Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. (PMID: 23453885) (Lancet 2013) 3
  5. Genome-wide association analysis identifies 13 new risk loci for schizophrenia. (PMID: 23974872) Ripke S. … Sullivan P.F. (Nat. Genet. 2013) 3

Products for C10orf32-ASMT Gene

Sources for C10orf32-ASMT Gene

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