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Aliases for C10orf25 Gene

Aliases for C10orf25 Gene

  • Chromosome 10 Open Reading Frame 25 2 3

External Ids for C10orf25 Gene

Previous GeneCards Identifiers for C10orf25 Gene

  • GC10M044777
  • GC10M044809
  • GC10U900614
  • GC10M045493
  • GC10M042018

Summaries for C10orf25 Gene

GeneCards Summary for C10orf25 Gene

C10orf25 (Chromosome 10 Open Reading Frame 25) is a Protein Coding gene. Diseases associated with C10orf25 include alzheimer disease.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf25 Gene

Genomics for C10orf25 Gene

Regulatory Elements for C10orf25 Gene

Genomic Location for C10orf25 Gene

Start:
44,997,698 bp from pter
End:
45,001,022 bp from pter
Size:
3,325 bases
Orientation:
Minus strand

Genomic View for C10orf25 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf25 Gene

Proteins for C10orf25 Gene

  • Protein details for C10orf25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T742-CJ025_HUMAN
    Recommended name:
    Uncharacterized protein C10orf25
    Protein Accession:
    Q5T742
    Secondary Accessions:
    • A1L424
    • Q96NM5

    Protein attributes for C10orf25 Gene

    Size:
    122 amino acids
    Molecular mass:
    14441 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf25 Gene

Proteomics data for C10orf25 Gene at MOPED

Post-translational modifications for C10orf25 Gene

  • Glycosylation at Asn49
  • Modification sites at PhosphoSitePlus

Other Protein References for C10orf25 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf25 Gene

Domains for C10orf25 Gene

Protein Domains for C10orf25 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf25: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf25 Gene

Function for C10orf25 Gene

Phenotypes for C10orf25 Gene

GenomeRNAi human phenotypes for C10orf25:
genes like me logo Genes that share phenotypes with C10orf25: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C10orf25 Gene

Localization for C10orf25 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C10orf25 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf25 Gene COMPARTMENTS Subcellular localization image for C10orf25 gene
Compartment Confidence
extracellular 3

Gene Ontology (GO) - Cellular Components for C10orf25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with C10orf25: view

Pathways for C10orf25 Gene

SuperPathways for C10orf25 Gene

No Data Available

Interacting Proteins for C10orf25 Gene

Gene Ontology (GO) - Biological Process for C10orf25 Gene

None

No data available for Pathways by source for C10orf25 Gene

Transcripts for C10orf25 Gene

mRNA/cDNA for C10orf25 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf25 Gene

Chromosome 10 open reading frame 25:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf25

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C10orf25
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf25 Gene

No ASD Table

Relevant External Links for C10orf25 Gene

GeneLoc Exon Structure for
C10orf25
ECgene alternative splicing isoforms for
C10orf25

Expression for C10orf25 Gene

mRNA expression in normal human tissues for C10orf25 Gene

SOURCE GeneReport for Unigene cluster for C10orf25 Gene Hs.707791

genes like me logo Genes that share expressions with C10orf25: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for C10orf25 Gene

Orthologs for C10orf25 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C10orf25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf25 36
  • 99 (a)
OneToOne
Species with no ortholog for C10orf25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf25 Gene

ENSEMBL:
Gene Tree for C10orf25 (if available)
TreeFam:
Gene Tree for C10orf25 (if available)

Paralogs for C10orf25 Gene

No data available for Paralogs for C10orf25 Gene

Variants for C10orf25 Gene

Sequence variations from dbSNP and Humsavar for C10orf25 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs4948939 -- 44,997,255(+) CTGGA(A/G)CCAGG downstream-variant-500B
rs11239307 -- 44,997,314(+) TTGGG(C/T)GAGTT downstream-variant-500B
rs11239308 -- 44,997,585(+) CTCCA(A/C)CCTTC downstream-variant-500B
rs57644166 -- 44,998,143(+) TTTTA(A/G)AAGTT utr-variant-3-prime
rs75005490 -- 44,998,425(+) TCAAG(A/G)CAGAG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C10orf25 Gene

Variant ID Type Subtype PubMed ID
nsv831846 CNV Loss 17160897
nsv831848 CNV Gain 17160897

Relevant External Links for C10orf25 Gene

HapMap Linkage Disequilibrium report
C10orf25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf25 Gene

Disorders for C10orf25 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for C10orf25 Gene including...

Search for C10orf25 Gene in MalaCards »

Relevant External Links for C10orf25

Human Genome Epidemiology (HuGE) Navigator
C10orf25
genes like me logo Genes that share disorders with C10orf25: view

No data available for UniProtKB/Swiss-Prot for C10orf25 Gene

Publications for C10orf25 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C10orf25 Gene

Sources for C10orf25 Gene

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