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Aliases for C10orf120 Gene

Aliases for C10orf120 Gene

  • Chromosome 10 Open Reading Frame 120 2 3
  • BA318C4.1 3

External Ids for C10orf120 Gene

Previous GeneCards Identifiers for C10orf120 Gene

  • GC10M123998
  • GC10M124447
  • GC10M118075

Summaries for C10orf120 Gene

GeneCards Summary for C10orf120 Gene

C10orf120 (Chromosome 10 Open Reading Frame 120) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf120 Gene

Genomics for C10orf120 Gene

Regulatory Elements for C10orf120 Gene

Genomic Location for C10orf120 Gene

Chromosome:
10
Start:
122,697,709 bp from pter
End:
122,699,822 bp from pter
Size:
2,114 bases
Orientation:
Minus strand

Genomic View for C10orf120 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf120 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf120 Gene

Proteins for C10orf120 Gene

  • Protein details for C10orf120 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SQS8-CJ120_HUMAN
    Recommended name:
    Uncharacterized protein C10orf120
    Protein Accession:
    Q5SQS8
    Secondary Accessions:
    • B2RU17

    Protein attributes for C10orf120 Gene

    Size:
    335 amino acids
    Molecular mass:
    39268 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf120 Gene

Proteomics data for C10orf120 Gene at MOPED

Post-translational modifications for C10orf120 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf120 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf120 Gene

Domains & Families for C10orf120 Gene

Protein Domains for C10orf120 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf120: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf120 Gene

Function for C10orf120 Gene

Phenotypes for C10orf120 Gene

MGI mutant phenotypes for C10orf120:
inferred from 1 alleles
GenomeRNAi human phenotypes for C10orf120:
genes like me logo Genes that share phenotypes with C10orf120: view

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C10orf120
    • Block miRNA regulation of C10orf120 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf120

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf120 Gene

    Localization for C10orf120 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C10orf120 Gene

    Pathways & Interactions for C10orf120 Gene

    SuperPathways for C10orf120 Gene

    No Data Available

    Interacting Proteins for C10orf120 Gene

    Gene Ontology (GO) - Biological Process for C10orf120 Gene

    None

    No data available for Pathways by source and SIGNOR curated interactions for C10orf120 Gene

    Drugs & Compounds for C10orf120 Gene

    No Compound Related Data Available

    Transcripts for C10orf120 Gene

    mRNA/cDNA for C10orf120 Gene

    (1) REFSEQ mRNAs :
    (1) Additional mRNA sequences :
    (4) Selected AceView cDNA sequences:
    (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for C10orf120 Gene

    Chromosome 10 open reading frame 120:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate C10orf120
      • Block miRNA regulation of C10orf120 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf120

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for C10orf120 Gene

      No ASD Table

      Relevant External Links for C10orf120 Gene

      GeneLoc Exon Structure for
      C10orf120
      ECgene alternative splicing isoforms for
      C10orf120

      Expression for C10orf120 Gene

      mRNA expression in normal human tissues for C10orf120 Gene

      mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

      mRNA differential expression in normal tissues according to GTEx for C10orf120 Gene

      This gene is overexpressed in Testis (x51.9).

      Protein differential expression in normal tissues from HIPED for C10orf120 Gene

      This gene is overexpressed in Fetal ovary (69.0).

      Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf120 Gene



      SOURCE GeneReport for Unigene cluster for C10orf120 Gene Hs.363649

      genes like me logo Genes that share expression patterns with C10orf120: view

      Protein tissue co-expression partners for C10orf120 Gene

      Primer Products

      In Situ Assay Products

      No data available for mRNA Expression by UniProt/SwissProt for C10orf120 Gene

      Orthologs for C10orf120 Gene

      This gene was present in the common ancestor of mammals.

      Orthologs for C10orf120 Gene

      Organism Taxonomy Gene Similarity Type Details
      cow
      (Bos Taurus)
      Mammalia C26H10orf120 35
      • 73.33 (n)
      • 60.9 (a)
      C26H10orf120 36
      • 59 (a)
      OneToOne
      dog
      (Canis familiaris)
      Mammalia C28H10orf120 35
      • 74.75 (n)
      • 62.12 (a)
      C10orf120 36
      • 62 (a)
      OneToOne
      mouse
      (Mus musculus)
      Mammalia 4933402N03Rik 35
      • 65.93 (n)
      • 52.85 (a)
      4933402N03Rik 16
      4933402N03Rik 36
      • 50 (a)
      OneToOne
      chimpanzee
      (Pan troglodytes)
      Mammalia C10H10orf120 35
      • 99.1 (n)
      • 98.21 (a)
      C10orf120 36
      • 98 (a)
      OneToOne
      rat
      (Rattus norvegicus)
      Mammalia LOC499276 35
      • 65.74 (n)
      • 51.08 (a)
      oppossum
      (Monodelphis domestica)
      Mammalia C10orf120 36
      • 46 (a)
      OneToOne
      Species with no ortholog for C10orf120:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for C10orf120 Gene

      ENSEMBL:
      Gene Tree for C10orf120 (if available)
      TreeFam:
      Gene Tree for C10orf120 (if available)

      Paralogs for C10orf120 Gene

      No data available for Paralogs for C10orf120 Gene

      Variants for C10orf120 Gene

      Sequence variations from dbSNP and Humsavar for C10orf120 Gene

      SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
      rs2901343 -- 122,698,390(+) TAGTC(C/T)GGAGA synonymous-codon, reference
      rs2947594 - 122,697,936(+) CTTTG(C/T)GGGGA missense, reference
      rs3019496 -- 122,697,436(-) AAAAC(A/G)ACAAT downstream-variant-500B
      rs3019497 -- 122,697,251(-) CATTT(G/T)TCCTC downstream-variant-500B
      rs7922701 -- 122,698,864(+) GCTCA(C/T)GCCTG intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for C10orf120 Gene

      Variant ID Type Subtype PubMed ID
      nsv7584 CNV Insertion 18451855
      nsv509370 CNV Insertion 20534489
      esv272894 CNV Insertion 20981092
      esv270924 CNV Insertion 20981092

      Variation tolerance for C10orf120 Gene

      Residual Variation Intolerance Score: 75.72% of all genes are more intolerant (likely to be disease-causing)
      Gene Damage Index Score: 4.23; 62.24% of all genes are more intolerant (likely to be disease-causing)

      Relevant External Links for C10orf120 Gene

      HapMap Linkage Disequilibrium report
      C10orf120

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf120 Gene

      Disorders for C10orf120 Gene

      Relevant External Links for C10orf120

      Atlas of Genetics and Cytogenetics in Oncology and Haematology:
      C10orf120
      genes like me logo Genes that share disorders with C10orf120: view

      No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf120 Gene

      Publications for C10orf120 Gene

      1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 67
      2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
      3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

      Products for C10orf120 Gene

      Sources for C10orf120 Gene

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