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Aliases for C10orf12 Gene

Aliases for C10orf12 Gene

  • Chromosome 10 Open Reading Frame 12 2 3

External Ids for C10orf12 Gene

Summaries for C10orf12 Gene

GeneCards Summary for C10orf12 Gene

C10orf12 (Chromosome 10 Open Reading Frame 12) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf12 Gene

Genomics for C10orf12 Gene

Genomic Location for C10orf12 Gene

Start:
96,981,284 bp from pter
End:
96,986,212 bp from pter
Size:
4,929 bases
Orientation:
Plus strand

Genomic View for C10orf12 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf12 Gene

Regulatory Elements for C10orf12 Gene

Proteins for C10orf12 Gene

  • Protein details for C10orf12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N655-CJ012_HUMAN
    Recommended name:
    Uncharacterized protein C10orf12
    Protein Accession:
    Q8N655
    Secondary Accessions:
    • Q9H945
    • Q9Y457

    Protein attributes for C10orf12 Gene

    Size:
    1247 amino acids
    Molecular mass:
    137223 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14396.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C10orf12 Gene

Proteomics data for C10orf12 Gene at MOPED

Post-translational modifications for C10orf12 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys813

Other Protein References for C10orf12 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf12 Gene

Domains for C10orf12 Gene

Protein Domains for C10orf12 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C10orf12: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C10orf12 Gene

Function for C10orf12 Gene

Gene Ontology (GO) - Molecular Function for C10orf12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C10orf12: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C10orf12 Gene

Localization for C10orf12 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf12 Gene COMPARTMENTS Subcellular localization image for C10orf12 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for C10orf12 Gene

Pathways for C10orf12 Gene

SuperPathways for C10orf12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C10orf12 Gene

None

No data available for Pathways by source for C10orf12 Gene

Transcripts for C10orf12 Gene

mRNA/cDNA for C10orf12 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(43) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf12 Gene

Chromosome 10 open reading frame 12:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf12 Gene

No ASD Table

Relevant External Links for C10orf12 Gene

GeneLoc Exon Structure for
C10orf12
ECgene alternative splicing isoforms for
C10orf12

Expression for C10orf12 Gene

mRNA expression in normal human tissues for C10orf12 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C10orf12 Gene

SOURCE GeneReport for Unigene cluster for C10orf12 Gene Hs.14555

genes like me logo Genes that share expressions with C10orf12: view

Orthologs for C10orf12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf12 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C10orf12 37
  • 77 (a)
OneToOne
LCOR 36
  • 83.51 (n)
  • 77.03 (a)
dog
(Canis familiaris)
Mammalia C10orf12 37
  • 71 (a)
OneToOne
LCOR 36
  • 85.86 (n)
  • 80.84 (a)
mouse
(Mus musculus)
Mammalia Gm340 16
Gm340 37
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C10orf12 37
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf12 37
  • 49 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lcor 36
  • 72.24 (n)
  • 62.57 (a)
chicken
(Gallus gallus)
Aves -- 37
  • 42 (a)
OneToMany
-- 37
  • 79 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia C10orf12 37
  • 39 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.17506 36
zebrafish
(Danio rerio)
Actinopterygii C1H10orf12 37
  • 10 (a)
OneToOne
Species with no ortholog for C10orf12:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf12 Gene

ENSEMBL:
Gene Tree for C10orf12 (if available)
TreeFam:
Gene Tree for C10orf12 (if available)

Paralogs for C10orf12 Gene

Pseudogenes.org Pseudogenes for C10orf12 Gene

genes like me logo Genes that share paralogs with C10orf12: view

No data available for Paralogs for C10orf12 Gene

Variants for C10orf12 Gene

Sequence variations from dbSNP and Humsavar for C10orf12 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs3814163 -- 96,982,848(+) TCACT(C/T)GAAGA reference, synonymous-codon
rs3829856 - 96,982,993(+) TTGAA(A/C)TCAAA reference, missense
rs5787211 -- 96,980,163(+) AAAAC(-/A)AAAAA upstream-variant-2KB
rs7082522 - 96,982,331(+) TCACC(C/T)TCCTG missense, reference
rs7098255 -- 96,982,264(+) CGAAC(C/T)TGAGC reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for C10orf12 Gene

Variant ID Type Subtype PubMed ID
nsv831951 CNV Gain 17160897

Relevant External Links for C10orf12 Gene

HapMap Linkage Disequilibrium report
C10orf12

Disorders for C10orf12 Gene

No disorders were found for C10orf12 Gene.

No data available for UniProtKB/Swiss-Prot for C10orf12 Gene

Publications for C10orf12 Gene

  1. Reciprocal interactions of human C10orf12 and C17orf96 with PRC2 revealed by BioTAP-XL cross-linking and affinity purification. (PMID: 24550272) Alekseyenko A.A. … Kuroda M.I. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3

Products for C10orf12 Gene

  • antibodies-online peptides for C10orf12
  • antibodies-online antibodies for C10orf12
  • antibodies-online kits for C10orf12

Sources for C10orf12 Gene

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