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Aliases for C10orf111 Gene

Aliases for C10orf111 Gene

  • Chromosome 10 Open Reading Frame 111 2 3
  • Uncharacterized Protein C10orf111 3
  • BA455B2.4 3

External Ids for C10orf111 Gene

Previous GeneCards Identifiers for C10orf111 Gene

  • GC10M015142
  • GC10M015177
  • GC10M015047

Summaries for C10orf111 Gene

GeneCards Summary for C10orf111 Gene

C10orf111 (Chromosome 10 Open Reading Frame 111) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf111 Gene

Genomics for C10orf111 Gene

Regulatory Elements for C10orf111 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C10orf111 Gene

Start:
15,095,385 bp from pter
End:
15,097,319 bp from pter
Size:
1,935 bases
Orientation:
Minus strand

Genomic View for C10orf111 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C10orf111 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf111 Gene

Proteins for C10orf111 Gene

  • Protein details for C10orf111 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N326-CJ111_HUMAN
    Recommended name:
    Uncharacterized protein C10orf111
    Protein Accession:
    Q8N326
    Secondary Accessions:
    • B2RAC4

    Protein attributes for C10orf111 Gene

    Size:
    155 amino acids
    Molecular mass:
    17766 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf111 Gene

Proteomics data for C10orf111 Gene at MOPED

Post-translational modifications for C10orf111 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf111 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf111 Gene

Domains for C10orf111 Gene

Protein Domains for C10orf111 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf111: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C10orf111 Gene

Function for C10orf111 Gene

Phenotypes for C10orf111 Gene

genes like me logo Genes that share phenotypes with C10orf111: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C10orf111 Gene

Localization for C10orf111 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C10orf111 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf111 Gene COMPARTMENTS Subcellular localization image for C10orf111 gene
Compartment Confidence
nucleus 2

Gene Ontology (GO) - Cellular Components for C10orf111 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C10orf111: view

Pathways for C10orf111 Gene

SuperPathways for C10orf111 Gene

No Data Available

Interacting Proteins for C10orf111 Gene

Gene Ontology (GO) - Biological Process for C10orf111 Gene

None

No data available for Pathways by source for C10orf111 Gene

Transcripts for C10orf111 Gene

mRNA/cDNA for C10orf111 Gene

(3) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C10orf111 Gene

Chromosome 10 open reading frame 111:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C10orf111

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C10orf111
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf111 Gene

No ASD Table

Relevant External Links for C10orf111 Gene

GeneLoc Exon Structure for
C10orf111
ECgene alternative splicing isoforms for
C10orf111

Expression for C10orf111 Gene

mRNA expression in normal human tissues for C10orf111 Gene

mRNA differential expression in normal tissues according to GTEx for C10orf111 Gene

This gene is overexpressed in Testis (5.6) and Brain - Cerebellar Hemisphere (4.1).

SOURCE GeneReport for Unigene cluster for C10orf111 Gene Hs.567777

genes like me logo Genes that share expressions with C10orf111: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C10orf111 Gene

Orthologs for C10orf111 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C10orf111 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf111 36
  • 97 (a)
OneToOne
Species with no ortholog for C10orf111:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C10orf111 Gene

ENSEMBL:
Gene Tree for C10orf111 (if available)
TreeFam:
Gene Tree for C10orf111 (if available)

Paralogs for C10orf111 Gene

No data available for Paralogs for C10orf111 Gene

Variants for C10orf111 Gene

Sequence variations from dbSNP and Humsavar for C10orf111 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs6602810 -- 15,094,929(+) ctgta(A/G)tccca intron-variant
rs139206051 -- 15,095,015(+) CACTT(C/T)AGCCT intron-variant
rs141524193 -- 15,095,148(+) GACTT(A/C)ATCTG intron-variant
rs145665660 -- 15,095,046(+) TCTCC(-/A)CAAAA intron-variant
rs182242867 -- 15,095,061(+) AAACC(A/G)TTTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf111 Gene

Variant ID Type Subtype PubMed ID
nsv831794 CNV Loss 17160897
dgv618n71 CNV Gain 21882294
nsv894899 CNV Gain 21882294

Relevant External Links for C10orf111 Gene

HapMap Linkage Disequilibrium report
C10orf111

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf111 Gene

Disorders for C10orf111 Gene

No disorders were found for C10orf111 Gene.

No data available for UniProtKB/Swiss-Prot for C10orf111 Gene

Publications for C10orf111 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for C10orf111 Gene

Sources for C10orf111 Gene

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