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Aliases for C10orf107 Gene

Aliases for C10orf107 Gene

  • Chromosome 10 Open Reading Frame 107 2 3 5
  • BA63A2.1 3

External Ids for C10orf107 Gene

Previous GeneCards Identifiers for C10orf107 Gene

  • GC10P062768
  • GC10P063092
  • GC10P063422
  • GC10P057411

Summaries for C10orf107 Gene

GeneCards Summary for C10orf107 Gene

C10orf107 (Chromosome 10 Open Reading Frame 107) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C10orf107 Gene

Genomics for C10orf107 Gene

Regulatory Elements for C10orf107 Gene

Promoters for C10orf107 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C10orf107 on UCSC Golden Path with GeneCards custom track

Genomic Location for C10orf107 Gene

Chromosome:
10
Start:
61,662,952 bp from pter
End:
61,766,766 bp from pter
Size:
103,815 bases
Orientation:
Plus strand

Genomic View for C10orf107 Gene

Genes around C10orf107 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C10orf107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C10orf107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C10orf107 Gene

Proteins for C10orf107 Gene

  • Protein details for C10orf107 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVU9-CJ107_HUMAN
    Recommended name:
    Uncharacterized protein C10orf107
    Protein Accession:
    Q8IVU9
    Secondary Accessions:
    • Q5T1B8

    Protein attributes for C10orf107 Gene

    Size:
    208 amino acids
    Molecular mass:
    23883 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C10orf107 Gene

Proteomics data for C10orf107 Gene at MOPED

Post-translational modifications for C10orf107 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C10orf107 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C10orf107 Gene

Domains & Families for C10orf107 Gene

Protein Domains for C10orf107 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C10orf107 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C10orf107: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C10orf107 Gene

Function for C10orf107 Gene

genes like me logo Genes that share phenotypes with C10orf107: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C10orf107 Gene

Localization for C10orf107 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C10orf107 Gene COMPARTMENTS Subcellular localization image for C10orf107 gene
Compartment Confidence
cytosol 2
nucleus 2
endoplasmic reticulum 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C10orf107 Gene

Pathways & Interactions for C10orf107 Gene

SuperPathways for C10orf107 Gene

No Data Available

Interacting Proteins for C10orf107 Gene

Gene Ontology (GO) - Biological Process for C10orf107 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C10orf107 Gene

Drugs & Compounds for C10orf107 Gene

No Compound Related Data Available

Transcripts for C10orf107 Gene

mRNA/cDNA for C10orf107 Gene

Unigene Clusters for C10orf107 Gene

Chromosome 10 open reading frame 107:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C10orf107 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7
SP1: -
SP2: -

Relevant External Links for C10orf107 Gene

GeneLoc Exon Structure for
C10orf107
ECgene alternative splicing isoforms for
C10orf107

Expression for C10orf107 Gene

mRNA expression in normal human tissues for C10orf107 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C10orf107 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x6.7) and Testis (x4.1).

Protein differential expression in normal tissues from HIPED for C10orf107 Gene

This gene is overexpressed in Fetal ovary (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C10orf107 Gene



SOURCE GeneReport for Unigene cluster for C10orf107 Gene Hs.673160

genes like me logo Genes that share expression patterns with C10orf107: view

Protein tissue co-expression partners for C10orf107 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for C10orf107 Gene

Orthologs for C10orf107 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C10orf107 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C28H10orf107 35
  • 88.67 (n)
  • 83.98 (a)
C10ORF107 36
  • 47 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C4H10orf107 35
  • 88.94 (n)
  • 83.65 (a)
C10orf107 36
  • 60 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700040L02Rik 35
  • 77.56 (n)
  • 74.52 (a)
1700040L02Rik 16
1700040L02Rik 36
  • 50 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf107 35
  • 98.56 (n)
  • 98.08 (a)
C10orf107 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1306739 35
  • 78.53 (n)
  • 75 (a)
oppossum
(Monodelphis domestica)
Mammalia C10orf107 36
  • 46 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf107 36
  • 44 (a)
OneToOne
chicken
(Gallus gallus)
Aves C6H10ORF107 35
  • 61.05 (n)
  • 44.21 (a)
C10orf107 36
  • 36 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 54 (a)
OneToMany
-- 36
  • 34 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100486238 35
  • 59.35 (n)
  • 52.2 (a)
zebrafish
(Danio rerio)
Actinopterygii zgc:194508 35
  • 49.75 (n)
  • 35.32 (a)
C12H10orf107 36
  • 17 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 17 (a)
OneToOne
Species with no ortholog for C10orf107:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C10orf107 Gene

ENSEMBL:
Gene Tree for C10orf107 (if available)
TreeFam:
Gene Tree for C10orf107 (if available)

Paralogs for C10orf107 Gene

No data available for Paralogs for C10orf107 Gene

Variants for C10orf107 Gene

Sequence variations from dbSNP and Humsavar for C10orf107 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs718146 -- 61,727,686(+) GTAGC(A/G)TGTAT intron-variant
rs723327 -- 61,686,764(-) CACCA(C/T)TATTT intron-variant
rs973237 -- 61,765,543(+) TACAC(A/G)GGAGA intron-variant
rs994811 -- 61,735,126(+) GAGAA(C/T)AAAAT intron-variant
rs1373521 -- 61,761,669(+) ATATT(G/T)TGAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C10orf107 Gene

Variant ID Type Subtype PubMed ID
dgv42n21 CNV Loss 19592680
esv1510214 CNV Insertion 17803354
esv2737507 CNV Deletion 23290073

Variation tolerance for C10orf107 Gene

Residual Variation Intolerance Score: 47.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.63; 13.50% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C10orf107 Gene

HapMap Linkage Disequilibrium report
C10orf107

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C10orf107 Gene

Disorders for C10orf107 Gene

Relevant External Links for C10orf107

Genetic Association Database (GAD)
C10orf107
Human Genome Epidemiology (HuGE) Navigator
C10orf107
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C10orf107

No disorders were found for C10orf107 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C10orf107 Gene

Publications for C10orf107 Gene

  1. Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure. (PMID: 21909110) Wain L.V. … van Duijn C.M. (Nat. Genet. 2011) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study. (PMID: 23006423) Niu N. … Wang L. (BMC Cancer 2012) 3
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  5. Common variants in or near FGF5, CYP17A1 and MTHFR genes are associated with blood pressure and hypertension in Chinese Hans. (PMID: 20852445) Liu C. … Lin X. (J. Hypertens. 2011) 3

Products for C10orf107 Gene

Sources for C10orf107 Gene

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