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Aliases for BUD13 Gene

Aliases for BUD13 Gene

  • BUD13 Homolog 2 3 5
  • Functional Spliceosome-Associated Protein 71 2 3
  • BUD13 Homolog (S. Cerevisiae) 2
  • BUD13 Homolog (Yeast) 2
  • FSAP71 3
  • Cwc26 3

External Ids for BUD13 Gene

Previous GeneCards Identifiers for BUD13 Gene

  • GC11M116125
  • GC11M116618
  • GC11M112550

Summaries for BUD13 Gene

GeneCards Summary for BUD13 Gene

BUD13 (BUD13 Homolog) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BUD13 Gene

Genomics for BUD13 Gene

Regulatory Elements for BUD13 Gene

Promoters for BUD13 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BUD13 on UCSC Golden Path with GeneCards custom track

Genomic Location for BUD13 Gene

Chromosome:
11
Start:
116,748,170 bp from pter
End:
116,772,998 bp from pter
Size:
24,829 bases
Orientation:
Minus strand

Genomic View for BUD13 Gene

Genes around BUD13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BUD13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BUD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BUD13 Gene

Proteins for BUD13 Gene

  • Protein details for BUD13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BRD0-BUD13_HUMAN
    Recommended name:
    BUD13 homolog
    Protein Accession:
    Q9BRD0
    Secondary Accessions:
    • A8K0S0
    • Q96LS7

    Protein attributes for BUD13 Gene

    Size:
    619 amino acids
    Molecular mass:
    70521 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BUD13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BUD13 Gene

Proteomics data for BUD13 Gene at MOPED

Post-translational modifications for BUD13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BUD13 Gene

No data available for DME Specific Peptides for BUD13 Gene

Domains & Families for BUD13 Gene

Protein Domains for BUD13 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BUD13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BRD0

UniProtKB/Swiss-Prot:

BUD13_HUMAN :
  • Belongs to the CWC26 family.
Family:
  • Belongs to the CWC26 family.
genes like me logo Genes that share domains with BUD13: view

No data available for Gene Families for BUD13 Gene

Function for BUD13 Gene

Gene Ontology (GO) - Molecular Function for BUD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with BUD13: view
genes like me logo Genes that share phenotypes with BUD13: view

Animal Model Products

miRNA for BUD13 Gene

miRTarBase miRNAs that target BUD13

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BUD13 Gene

Localization for BUD13 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BUD13 Gene COMPARTMENTS Subcellular localization image for BUD13 gene
Compartment Confidence
nucleus 5
cytosol 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for BUD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070274 RES complex ISS 15565172
genes like me logo Genes that share ontologies with BUD13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for BUD13 Gene

Pathways & Interactions for BUD13 Gene

SuperPathways for BUD13 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BUD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome ISS 15565172
genes like me logo Genes that share ontologies with BUD13: view

No data available for Pathways by source and SIGNOR curated interactions for BUD13 Gene

Drugs & Compounds for BUD13 Gene

No Compound Related Data Available

Transcripts for BUD13 Gene

Unigene Clusters for BUD13 Gene

BUD13 homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BUD13 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b
SP1:
SP2: -
SP3: -

Relevant External Links for BUD13 Gene

GeneLoc Exon Structure for
BUD13
ECgene alternative splicing isoforms for
BUD13

Expression for BUD13 Gene

mRNA expression in normal human tissues for BUD13 Gene

Protein differential expression in normal tissues from HIPED for BUD13 Gene

This gene is overexpressed in Plasma (36.4) and Peripheral blood mononuclear cells (14.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for BUD13 Gene



SOURCE GeneReport for Unigene cluster for BUD13 Gene Hs.437341

genes like me logo Genes that share expression patterns with BUD13: view

Protein tissue co-expression partners for BUD13 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BUD13 Gene

Orthologs for BUD13 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for BUD13 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BUD13 35
  • 86.03 (n)
  • 83.98 (a)
BUD13 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bud13 35
  • 82.27 (n)
  • 81.77 (a)
Bud13 16
Bud13 36
  • 76 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia BUD13 35
  • 99.57 (n)
  • 99.52 (a)
BUD13 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bud13 35
  • 81.12 (n)
  • 79.8 (a)
dog
(Canis familiaris)
Mammalia BUD13 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BUD13 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BUD13 36
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves BUD13 35
  • 64.36 (n)
  • 61.05 (a)
-- 36
  • 69 (a)
OneToMany
BUD13 36
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia BUD13 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bud13 35
  • 56.43 (n)
  • 55.88 (a)
Str.15096 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.29018 35
zebrafish
(Danio rerio)
Actinopterygii wufi47e11 35
BUD13 36
  • 53 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.14099 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011249 35
  • 46.68 (n)
  • 42.83 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG13625 35
  • 45.99 (n)
  • 40.92 (a)
CG13625 36
  • 31 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea R08D7.1 35
  • 46.06 (n)
  • 40.66 (a)
R08D7.1 36
  • 33 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes BUD13 38
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9379 36
  • 40 (a)
OneToOne
Species with no ortholog for BUD13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BUD13 Gene

ENSEMBL:
Gene Tree for BUD13 (if available)
TreeFam:
Gene Tree for BUD13 (if available)

Paralogs for BUD13 Gene

Pseudogenes.org Pseudogenes for BUD13 Gene

genes like me logo Genes that share paralogs with BUD13: view

No data available for Paralogs for BUD13 Gene

Variants for BUD13 Gene

Sequence variations from dbSNP and Humsavar for BUD13 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10488698 - 116,763,231(-) ATTTT(C/T)GTCAC reference, missense
rs11820589 - 116,763,146(+) GATCC(A/G)GGGTG reference, missense
rs11216131 - 116,762,864(+) CCCTT(A/C)TGGGG intron-variant, reference, missense
rs35004487 - 116,760,826(+) GGTCA(C/G)AATCA reference, missense
rs180322 -- 116,756,019(-) cattg(A/G)ccagg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BUD13 Gene

Variant ID Type Subtype PubMed ID
nsv507 CNV Loss 18451855

Variation tolerance for BUD13 Gene

Residual Variation Intolerance Score: 59.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.21; 81.01% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BUD13 Gene

HapMap Linkage Disequilibrium report
BUD13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BUD13 Gene

Disorders for BUD13 Gene

Relevant External Links for BUD13

Genetic Association Database (GAD)
BUD13
Human Genome Epidemiology (HuGE) Navigator
BUD13
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BUD13

No disorders were found for BUD13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BUD13 Gene

Publications for BUD13 Gene

  1. A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium. (PMID: 21386085) Kraja A.T. … Borecki I.B. (Diabetes 2011) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Association of the variants in the BUD13-ZNF259 genes and the risk of hyperlipidaemia. (PMID: 24780069) Aung L.H. … Pan S.L. (J. Cell. Mol. Med. 2014) 3
  5. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin S.Y. … Soranzo N. (Nat. Genet. 2014) 3

Products for BUD13 Gene

Sources for BUD13 Gene

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