BUD13 Gene
protein-coding GIFtS: 48
GCID: GC11M116618
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BUD13 homolog (S. cerevisiae)(Previous name: BUD13 homolog (yeast) )
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Aliases
for BUD13 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| BUD13 Homolog (S. Cerevisiae)1 2 | | BUD13 Homolog (Yeast)1 | | Cwc261 2 | | BUD13 Homolog2 | | FSAP711 | | Functional Spliceosome-Associated Protein 712 | | MGC131251 | | |
Export aliases for BUD13 gene to outside databasesPrevious GC identifers: GC11M116125 GC11M112550 |
Summaries
for BUD13 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for BUD13 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_033899.8
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the BUD13 gene promoter:
PPAR-alpha PPAR-gamma1 HNF-4alpha2 PPAR-gamma2 HNF-4alpha1
Other transcription factors
Search SABiosciences Chromatin IP Primers for BUD13
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BUD13 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q23.3 Ensembl cytogenetic band: 11q23.3 HGNC cytogenetic band: 11q23.3BUD13 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M116618: view genomic region
(about GC identifiers)
Start:
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116,618,886 bp from pter |
End:
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116,643,714 bp from pter |
Size:
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24,829 bases |
Orientation:
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minus strand |
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Proteins
for BUD13 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: BUD13_HUMAN, Q9BRD0 (See
protein sequence)Recommended Name: BUD13 homolog Size: 619 amino acids; 70521 Da
Secondary accessions: A8K0S0 Q96LS7Alternative splicing: 2 isoforms: Q9BRD0-1 Q9BRD0-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for BUD13: NX_Q9BRD0
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BRD0
BUD13 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001153208.1 NP_116114.1
ENSEMBL proteins: ENSP00000415748 ENSP00000364594 ENSP00000260210
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table
BUD13 for ontologies About GeneDecksing
BUD13 Antibody Products:
Assay Products for BUD13: |
Protein
Domains /
Families
for BUD13 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
BUD13 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9BRD0ProtoNet protein and cluster: Q9BRD0 UniProtKB/Swiss-Prot: BUD13_HUMAN, Q9BRD0Similarity: Belongs to the CWC26 family |
Function
for BUD13 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BUD13 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BUD13 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector (see all 2): BUD13 (NM_032725) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BUD13 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BUD13 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BUD13 |
4 GenomeRNAi human phenotypes for BUD13:
|
Pathways & Interactions
for BUD13 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BUD13
STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)
5/12 Interacting proteins for BUD13 (Q9BRD02, 3 ENSP000002602104) via UniProtKB, MINT, STRING, and/or I2D (see all 12)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table
BUD13 for ontologies About GeneDecksing
|
Drugs & Compounds
for BUD13 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for BUD13
Search CenterWatch for drugs/clinical trials and news about BUD13
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Transcripts
for BUD13 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for BUD13 gene (2 alternative transcripts): NM_001159736.1 NM_032725.3 Unigene Cluster for BUD13: BUD13 homolog (S. cerevisiae) Hs.437341 [show with all ESTs]Unigene Representative Sequence: BC0063503 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000419189 ENST00000375445 ENST00000260210(uc001ppn.3 uc001ppo.3 uc009yzc.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BUD13 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BUD13 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): BUD13 (NM_032725) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BUD13 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BUD13 |
Additional cDNA sequence: AK057832.1 AK130600.1 AK225164.1 AK289635.1 AK291111.1 AK311068.1 BC006350.2 4 DOTS entries: DT.308435 DT.100781471 DT.75162272 DT.120679423 24/75 AceView cDNA sequences (see all 75): BX279559 CR619032 CA489140 BI333203 BU172932 BM826688 BC006350 H69934 BP373553 BQ722337 AA348359 BX394781 BM762144 CR600270 BQ437645 NM_032725 AA348358 AW079155 BG773169 AA985515 BG767969 BI088420 BX488869 BX348639
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for BUD13 About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b |
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| SP1: | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | - | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | - | | | | | | | | | | | |
ECgene alternative splicing isoforms for BUD13
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Expression
for BUD13 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| BUD13 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TATTTATTTT
About this image
See BUD13 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for BUD13
SOURCE GeneReport for Unigene cluster: Hs.437341
SABiosciences Custom PCR Arrays for BUD13
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BUD13
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat BUD13 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BUD13 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BUD13 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BUD13 |
Orthologs
for BUD13 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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This gene was present in the common ancestor of eukaryotes.
Orthologs for BUD13 gene from 9/30 species (see all 30) About this table
ENSEMBL Gene Tree for BUD13 (if available)
TreeFam Gene Tree for BUD13 (if available) |
Paralogs
for BUD13 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for BUD13 gene
BUD13 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for BUD13
PGOHUM00000242870
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Genomic Variants
for BUD13 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for BUD13 (116618886 - 116643714 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for BUD13
1 CNV: 34918 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BUD13 |
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Disorders
/ Diseases
for BUD13 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
BUD13 for disorders About GeneDecksing
4  diseases for BUD13: About MalaCardshypertriglyceridemia multiple sclerosis cholesterol malaria
Human Genome Epidemiology (HuGE) Navigator: BUD13 (4 documents)
Export disorders for BUD13 gene to outside databases
|
Publications
for BUD13 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for BUD13 gene, integrated from 9 sources (see all 31):
(articles sorted by number of sources associating them with BUD13) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men. (PubMed id 22437554)1 Major J.M....Albanes D. (2012)
- A bivariate genome-wide approach to metabolic syndrom e: STAMPEED consortium. (PubMed id 21386085)1 Kraja A.T....Borecki I.B. (2011)
- Genome-wide association study identifies common varian ts associated with circulating vitamin E levels. (PubMed id 21729881)1 Major J.M....Albanes D. (2011)
- Identification of proteins associated with ligand-acti vated estrogen receptor a in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS. (PubMed id 21182205)1 Tarallo R....Weisz A. (2011)
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
- Large-scale genome-wide association studies in East As ians identify new genetic loci influencing metabolic traits. (PubMed id 21909109)1 Kim Y.J....Cho Y.S. (2011)
- Common human genetic variants and HIV-1 susceptibilit y: a genome-wide survey in a homogeneous African population. (PubMed id 21160409)1 Petrovski S....Goldstein D.B. (2011)
- Genome-wide association study of Lp-PLA(2) activity a nd mass in the Framingham Heart Study. (PubMed id 20442857)1 Suchindran S....McCarthy J.J. (2010)
- Genetic variants influencing circulating lipid levels and risk of coronary artery disease. (PubMed id 20864672)1 Waterworth D.M....Sandhu M.S. (2010)
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External Searches for BUD13 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing BUD13 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing BUD13 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BUD13 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for BUD13 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for BUD13 gene:
Search GeneIP for patents involving BUD13
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for BUD13 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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 | |
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for BUD13 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for BUD13 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BUD13 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for BUD13 | | OriGene 3'-UTR Clone for BUD13 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BUD13 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BUD13 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat BUD13 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BUD13 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BUD13 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BUD13 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BUD13 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BUD13 |
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| | | | Search Tocris compounds for BUD13 |
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 | | | BUD13 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BUD13 |
|  |  |  | | | | ThermoFisher Antibody for BUD13 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BUD13 |
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