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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BTNL9 Gene

protein-coding   GIFtS: 44
GCID: GC05P180467

Butyrophilin-Like 9

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Butyrophilin-Like 91 2
BTN32
VDLS19002
Butyrophilin 32
Butyrophilin-Like Protein 92

External Ids:    HGNC: 241761   Entrez Gene: 1535792   Ensembl: ENSG000001658107   UniProtKB: Q6UXG83   

Export aliases for BTNL9 gene to outside databases

Previous GC identifers: GC05P180577 GC05P180399 GC05P175192


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for BTNL9 Gene: 
BTNL9 (butyrophilin-like 9) is a protein-coding gene. Diseases associated with BTNL9 include batten disease. An important paralog of this gene is BTN3A2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NT_023133.13  NC_018916.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for BTNL9
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): BTNL9 promoter sequence
   Search SABiosciences Chromatin IP Primers for BTNL9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BTNL9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q35.3   Ensembl cytogenetic band:  5q35.3   HGNC cytogenetic band: 5q35.3

BTNL9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BTNL9 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P180467:  view genomic region     (about GC identifiers)

Start:
180,467,225 bp from pter      End:
180,488,523 bp from pter
Size:
21,299 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: BTNL9_HUMAN, Q6UXG8 (See protein sequence)
Recommended Name: Butyrophilin-like protein 9 precursor  
Size: 535 amino acids; 59716 Da
Subcellular location: Membrane; Single-pass type I membrane protein (By similarity)
Secondary accessions: A6NL42 Q6P660 Q96DM5
Alternative splicing: 3 isoforms:  Q6UXG8-1   Q6UXG8-2   Q6UXG8-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for BTNL9: NX_Q6UXG8

Explore proteomics data for BTNL9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6UXG8

  • BTNL9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    BTNL9 Protein Expression
    REFSEQ proteins: NP_689760.2  
    ENSEMBL proteins: 
     ENSP00000366037   ENSP00000330200   ENSP00000425424   ENSP00000427345   ENSP00000366038  

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    Cloud-Clone Corp. Proteins for BTNL9 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--

    BTNL9 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    VSET: Immunoglobulin superfamily / V-set domain containing

    5/10 InterPro protein domains (see all 10):
     IPR007110 Ig-like_dom
     IPR006574 PRY
     IPR003599 Ig_sub
     IPR001870 B30.2/SPRY
     IPR003877 SPRY_rcpt

    Graphical View of Domain Structure for InterPro Entry Q6UXG8

    ProtoNet protein and cluster: Q6UXG8

    2 Blocks protein domains:
    IPB003879 Butyrophylin C-terminal DUF signature
    IPB006574 SPRY-associated domain


    UniProtKB/Swiss-Prot: BTNL9_HUMAN, Q6UXG8
    Similarity: Belongs to the immunoglobulin superfamily. BTN/MOG family
    Similarity: Contains 1 B30.2/SPRY domain
    Similarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain


    BTNL9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    BTNL9 for ontologies           About GeneDecksing


    Phenotypes:
         1 MGI phenotypic allele for Btnl9 (no phenotypes)

    BTNL9 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Btnl9tm1Lex for BTNL9

       inGenious Targeting Laboratory - Custom generated mouse model solutions for BTNL9 
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    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTNL9


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BTNL9

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for BTNL9

    Search CenterWatch for drugs/clinical trials and news about BTNL9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for BTNL9 gene: 
    NM_152547.4  

    Unigene Cluster for BTNL9:

    Butyrophilin-like 9
    Hs.546502  [show with all ESTs]
    Unigene Representative Sequence: NM_152547
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000376841 ENST00000327705(uc003mmt.3) ENST00000491209(uc011dhi.1)
    ENST00000515271 ENST00000513424 ENST00000511589 ENST00000509395 ENST00000511056
    ENST00000506782 ENST00000512570 ENST00000376842
    miRNA
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    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BTNL9
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BTNL9
    Sirion Biotech Customized lentivirus for stable overexpression of BTNL9 
                         Customized lentivirus expression plasmids for stable overexpression of BTNL9 
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for BTNL9
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BTNL9
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BTNL9

    Additional mRNA sequence: 

    AK057097.1 AK298113.1 AK309516.1 AL833663.1 AY358358.1 BC029040.1 BC042112.1 BC062459.1 

    9 DOTS entries:

    DT.100016962  DT.435872  DT.95351135  DT.310817  DT.97819020  DT.40121472  DT.120803332  DT.120803340 
    DT.91701176 

    24/52 AceView cDNA sequences (see all 52):

    AI340345 BQ267852 BU677910 BC029040 CB267814 AW779597 AW207175 BC042112 
    BC062459 BU149912 BI916367 BQ129352 AA931528 AI679794 BX095991 AA766198 
    BF438630 Z24982 BM129807 AA434447 BU740561 BF062849 CK823621 AL833663 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    BTNL9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGCCGCTGTG
    BTNL9 Expression
    About this image


    See BTNL9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for BTNL9

    SOURCE GeneReport for Unigene cluster: Hs.546502
        SABiosciences Custom PCR Arrays for BTNL9
    Primer
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BTNL9
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTNL9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for BTNL9 gene from 1/6 species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Btnl91 , 5 butyrophilin-like 91, 5 77.44(n)1
    70.94(a)1
      11 (29.18 cM)5
    2377541  NM_172793.21  NP_766381.11 
     491655855 


    ENSEMBL Gene Tree for BTNL9 (if available)
    TreeFam Gene Tree for BTNL9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for BTNL9 gene
    BTN3A22  BTN2A12  BTNL82  ERMAP2  BTN2A22  BTN3A32  MOG2  BTN3A12  
    BTNL22  BTN1A12  BTNL32  
    18/31 SIMAP similar genes for BTNL9 using alignment to 4 protein entries:     BTNL9_HUMAN (see all proteins) (see all similar genes):
    BTN3A2    MOG    BTN3A3    BTN3A1    BTNL2    MEFV
    TRIM58    TRIM11    BTNL3    TRIM21    TRIM62    BTN1A1
    BTNL8    SKINT1    TRIM68    BTN2A2    BT3.3    BTNL10

    BTNL9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/655 SNPs in BTNL9 are shown (see all 655)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1446964731,2
    --180465247(+) AGGGA-/CCAGCC 1 -- us2k10--------
    rs575937321,2
    C,F--180465283(+) GATGCG/ACCTGA 1 -- us2k11Minor allele frequency- A:0.10WA 118
    rs1863862511,2
    --180465297(+) GCAGGC/TGGTGG 1 -- us2k10--------
    rs1472588181,2
    --180465307(+) TGGCA-/GGGGTGG 1 -- us2k10--------
    rs1908794771,2
    --180465476(+) TTCTCA/GTTTTC 1 -- us2k10--------
    rs1836036531,2
    --180465673(+) AGAATG/TTCTGT 1 -- us2k10--------
    rs1422911441,2
    --180465684(+) CCTCGA/CAGGCT 1 -- us2k10--------
    rs763528271,2
    C,F--180465722(+) CCTGAT/GCCTAC 1 -- us2k13Minor allele frequency- G:0.10WA NA EA 358
    rs779287471,2
    C,F--180465774(+) CCCTCC/TTCTGT 1 -- us2k11Minor allele frequency- T:0.08EA 120
    rs1512454521,2
    --180465801(+) AACTGC/TACCCA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for BTNL9 (180467225 - 180488523 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/15 variations for BTNL9 (see all 15):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv1265655CNV Insertion17803354
    esv1267126CNV Insertion17803354
    esv1001577CNV Insertion20482838
    nsv509112CNV Insertion20534489
    nsv5162CNV Insertion18451855
    dgv6407n71CNV Loss21882294
    nsv818395CNV Gain17921354
    nsv428133CNV Gain18775914
    dgv735n27CNV Gain19166990
    nsv883302CNV Gain21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    2 diseases for BTNL9:    About MalaCards
    batten disease    

    1 disease from the University of Copenhagen DISEASES database for BTNL9:
    Batten disease

    BTNL9 for disorders           About GeneDecksing


    Export disorders for BTNL9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for BTNL9 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with BTNL9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
    4. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    6. The cluster of BTN genes in the extended major histocompatibility complex. (PubMed id 11170752)9 Rhodes D.A.... Trowsdale J. (2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 153579 HGNC: 24176 AceView: BTNL9 Ensembl:ENSG00000165810 euGenes: HUgn153579
    ECgene: BTNL9 H-InvDB: BTNL9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for BTNL9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for BTNL9 gene:
    Search GeneIP for patents involving BTNL9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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