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BTNL3 Gene

protein-coding   GIFtS: 45
GCID: GC05P180415

Butyrophilin-Like 3

  Search for BTNL3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Butyrophilin-Like 31 2
Butyrophilin-Like Receptor1 2 3
BTNLR2 3
BTN9.12
Butyrophilin-Like Protein 32
COLF41003

External Ids:    HGNC: 11431   Entrez Gene: 109172   Ensembl: ENSG000001689037   OMIM: 6061925   UniProtKB: Q6UXE83   

Export aliases for BTNL3 gene to outside databases

Previous GC identifers: GC05P180545 GC05P181402 GC05P180480 GC05P180525 GC05P180348 GC05P175140


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for BTNL3 Gene:
BTNL3 (butyrophilin-like 3) is a protein-coding gene. An important paralog of this gene is BTN3A2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000005.10  NT_023133.14  NC_018916.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the BTNL3 gene promoter:
         AML1a   GATA-3   AP-4   CUTL1   Evi-1   GATA-2   GATA-1   POU2F1   FOXO1a   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidBTNL3 promoter sequence
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat BTNL3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q35.3   Ensembl cytogenetic band:  5q35.3   HGNC cytogenetic band: 5q35

BTNL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BTNL3 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05P180415:  view genomic region     (about GC identifiers)

Start:
180,415,845 bp from pter      End:
180,433,727 bp from pter
Size:
17,883 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: BTNL3_HUMAN, Q6UXE8 (See protein sequence)
Recommended Name: Butyrophilin-like protein 3 precursor  
Size: 466 amino acids; 52251 Da
Secondary accessions: Q496L7 Q9Y2C7
Alternative splicing: 2 isoforms:  Q6UXE8-1   Q6UXE8-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for BTNL3: NX_Q6UXE8

Explore proteomics data for BTNL3 at MOPED


See BTNL3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_932079.1  
ENSEMBL proteins: 
 ENSP00000341787  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
BTN: Butyrophilins
VSET: Immunoglobulin superfamily / V-set domain containing

Selected InterPro protein domains (see all 10):
 IPR001870 B30.2/SPRY
 IPR013783 Ig-like_fold
 IPR013106 Ig_V-set
 IPR003879 Butyrophylin
 IPR007110 Ig-like_dom

Graphical View of Domain Structure for InterPro Entry Q6UXE8

ProtoNet protein and cluster: Q6UXE8

2 Blocks protein domains:
IPB006574 SPRY-associated domain
IPB013106 Immunoglobulin V-set


UniProtKB/Swiss-Prot: BTNL3_HUMAN, Q6UXE8
Similarity: Belongs to the immunoglobulin superfamily. BTN/MOG family
Similarity: Contains 1 B30.2/SPRY domain
Similarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain


BTNL3 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:
     Genatlas biochemistry entry for BTNL3:
butyrophilin-like 8A,B box family of proteins,involved in cell proliferation and development

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003674molecular_function ND--
GO:0005515protein binding ----
     
BTNL3 for ontologies           About GeneDecksing


Phenotypes:
     1 MGI phenotypic allele for Btnl1 (no phenotypes)

BTNL3 for phenotypes           About GeneDecksing

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for BTNL3
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hsa-mir-148b-3p (MIRT019277)

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
BTNL3_HUMAN, Q6UXE8: Membrane; Single-pass type I membrane protein (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane3
extracellular2
endoplasmic reticulum1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005575cellular_component ND--
GO:0016021integral component of membrane IEA--

BTNL3 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for BTNL3
Interactions:

    Search GeneGlobe Interaction Network for BTNL3

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0008150biological_process ND--

BTNL3 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for BTNL3



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for BTNL3 gene (2 alternative transcripts): 
NM_006707.2  NM_197975.2  

Unigene Cluster for BTNL3:

Butyrophilin-like 3
Hs.225949  [show with all ESTs]
Unigene Representative Sequence: NM_197975
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000342868(uc003mmr.3 uc010jlp.3)
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Additional mRNA sequence: 

AK025267.1 AY358385.1 BC100800.1 BC100801.1 BC100802.1 

3 DOTS entries:

DT.101958827  DT.91731427  DT.91746954 

24 AceView cDNA sequences:

BM792815 AY358523 NM_197975 BX109154 NM_024850 AK025111 NM_006707 AI339669 
AK025267 AI991125 BX481901 BM922175 AY358385 BQ027683 CB852944 CB852920 
BI831158 AW000848 AB020625 AW629106 AU098650 BQ027973 AA884903 BF333492 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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BTNL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAATAGTTAT
BTNL3 Expression
About this image

BTNL3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

BTNL3 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.225949

UniProtKB/Swiss-Prot: BTNL3_HUMAN, Q6UXE8
Tissue specificity: Expressed in small intestine, colon, testis, spleen, and leukocyte

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTNL3

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for BTNL3 gene from Selected species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Btnl15 butyrophilin-like 1   --   17 (17.98 cM) 34377132 


ENSEMBL Gene Tree for BTNL3 (if available)
TreeFam Gene Tree for BTNL3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for BTNL3 gene
BTN3A22  BTN2A12  BTNL82  ERMAP2  BTN2A22  BTN3A32  MOG2  BTNL22  
BTN3A12  BTN1A12  BTNL92  
12 SIMAP similar genes for BTNL3 using alignment to 2 protein entries:     BTNL3_HUMAN (see all proteins):
BTNL8    BTNL2    BTN3A2    MOG    BTNL9    BTN1A1
BTN2A2    BTN2A3P    BT3.3    BTN2A1    BTN3A1    BTN3A3

BTNL3 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for BTNL3 (see all 396)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1838467071,2
--180414312(+) TGAATA/TTGTCA 1 -- us2k10--------
rs1405864861,2
C--180414347(+) TATTT-/AAAAAA 1 -- us2k10--------
rs1883379721,2
--180414424(+) TTCAAC/TGTATT 1 -- us2k10--------
rs733531011,2
C,F--180414557(+) CAGATT/GGTGGG 1 -- us2k13Minor allele frequency- G:0.06WA CSA 121
rs1904588081,2
--180414576(+) AAAGAA/GAAGTG 1 -- us2k10--------
rs733552031,2
C--180414599(+) AGACAA/GGGCGA 1 -- us2k15Minor allele frequency- G:0.22WA CSA NA EA 361
rs1827533731,2
--180414682(+) TTCTTG/TTTTCC 1 -- us2k10--------
rs1870480581,2
--180414788(+) ATTACC/TTTCAA 1 -- us2k10--------
rs1915654281,2
--180414993(+) ATAATC/TCCTAA 1 -- us2k10--------
rs1842408971,2
--180414999(+) CCTAAC/TTGTGT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for BTNL3 (180415845 - 180433727 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for BTNL3 (see all 22):    About this table    
Variant IDTypeSubtypePubMed ID
esv2421695CNV Deletion20811451
dgv1066e199CNV Deletion23128226
nsv821169CNV Deletion20802225
nsv471441CNV Deletion19718026
nsv509112CNV Insertion20534489
nsv819450CNV Loss19587683
nsv508390CNV Loss20534489
nsv820020CNV Loss19587683
nsv513283CNV Loss21212237
dgv988n67CNV Loss20364138

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 606192    OMIM disorders: --


BTNL3 for disorders           About GeneDecksing


Export disorders for BTNL3 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for BTNL3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with BTNL3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Cloning, expression analysis, and chromosomal localization of a novel butyrophilin-like receptor. (PubMed id 10429365)1, 2, 3 Shibui A.... Sugane K. (J. Hum. Genet. 1999)
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  4. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (Nature 2004)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 10917 HGNC: 1143 AceView: BTNL3andBTNL8 Ensembl:ENSG00000168903 euGenes: HUgn10917
ECgene: BTNL3 H-InvDB: BTNL3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for BTNL3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for BTNL3 gene:
Search GeneIP for patents involving BTNL3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Tissue Slides
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 See all of Abcam's Antibodies, Kits and Proteins for BTNL3
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 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for BTNL3
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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