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Aliases for BTNL3 Gene

Aliases for BTNL3 Gene

  • Butyrophilin-Like 3 2 3
  • Butyrophilin-Like Receptor 2 3 4
  • BTNLR 3 4
  • Butyrophilin-Like Protein 3 3
  • COLF4100 4
  • BTN9.1 3

External Ids for BTNL3 Gene

Summaries for BTNL3 Gene

GeneCards Summary for BTNL3 Gene

BTNL3 (Butyrophilin-Like 3) is a Protein Coding gene. An important paralog of this gene is BTNL9.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BTNL3 Gene

Genomics for BTNL3 Gene

Genomic Location for BTNL3 Gene

Start:
180,988,845 bp from pter
End:
181,006,727 bp from pter
Size:
17,883 bases
Orientation:
Plus strand

Genomic View for BTNL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BTNL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTNL3 Gene

Regulatory Elements for BTNL3 Gene

Proteins for BTNL3 Gene

  • Protein details for BTNL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UXE8-BTNL3_HUMAN
    Recommended name:
    Butyrophilin-like protein 3
    Protein Accession:
    Q6UXE8
    Secondary Accessions:
    • Q496L7
    • Q9Y2C7

    Protein attributes for BTNL3 Gene

    Size:
    466 amino acids
    Molecular mass:
    52251 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BTNL3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BTNL3 Gene

Proteomics data for BTNL3 Gene at MOPED

Post-translational modifications for BTNL3 Gene

No Post-translational modifications

Other Protein References for BTNL3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BTNL3 Gene

Domains for BTNL3 Gene

Gene Families for BTNL3 Gene

HGNC:
  • VSET :Immunoglobulin superfamily / V-set domain containing
  • BTN :Butyrophilins

UniProtKB/Swiss-Prot:

BTNL3_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • Q6UXE8
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.:
    • Q6UXE8
Family:
  • Belongs to the immunoglobulin superfamily. BTN/MOG family.:
    • Q6UXE8
genes like me logo Genes that share domains with BTNL3: view

Function for BTNL3 Gene

Molecular function for BTNL3 Gene

GENATLAS Biochemistry: butyrophilin-like 8A,B box family of proteins,involved in cell proliferation and development

Gene Ontology (GO) - Molecular Function for BTNL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with BTNL3: view

miRNA for BTNL3 Gene

miRTarBase miRNAs that target BTNL3

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for BTNL3 Gene

Localization for BTNL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BTNL3 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BTNL3 Gene COMPARTMENTS Subcellular localization image for BTNL3 gene
Compartment Confidence
plasma membrane 3
extracellular 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for BTNL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with BTNL3: view

Pathways for BTNL3 Gene

SuperPathways for BTNL3 Gene

No Data Available

Interacting Proteins for BTNL3 Gene

Gene Ontology (GO) - Biological Process for BTNL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with BTNL3: view

No data available for Pathways by source for BTNL3 Gene

Transcripts for BTNL3 Gene

mRNA/cDNA for BTNL3 Gene

Unigene Clusters for BTNL3 Gene

Butyrophilin-like 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BTNL3 Gene

No ASD Table

Relevant External Links for BTNL3 Gene

GeneLoc Exon Structure for
BTNL3
ECgene alternative splicing isoforms for
BTNL3

Expression for BTNL3 Gene

mRNA expression in normal human tissues for BTNL3 Gene

mRNA differential expression in normal tissues according to GTEx for BTNL3 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (24.2), Colon - Transverse (20.3), and Whole Blood (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for BTNL3 Gene

SOURCE GeneReport for Unigene cluster for BTNL3 Gene Hs.225949

mRNA Expression by UniProt/SwissProt for BTNL3 Gene

Q6UXE8-BTNL3_HUMAN
Tissue specificity: Expressed in small intestine, colon, testis, spleen, and leukocyte.
genes like me logo Genes that share expressions with BTNL3: view

Orthologs for BTNL3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for BTNL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BTNL3 36
  • 97.93 (n)
  • 96.78 (a)
BTNL3 37
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 27 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Btnl1 16
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 40 (a)
ManyToMany
-- 37
  • 39 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 35 (a)
ManyToMany
-- 37
  • 44 (a)
ManyToMany
Species with no ortholog for BTNL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for BTNL3 Gene

ENSEMBL:
Gene Tree for BTNL3 (if available)
TreeFam:
Gene Tree for BTNL3 (if available)

Paralogs for BTNL3 Gene

Paralogs for BTNL3 Gene

Selected SIMAP similar genes for BTNL3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with BTNL3: view

Variants for BTNL3 Gene

Sequence variations from dbSNP and Humsavar for BTNL3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs2276996 -- 181,004,169(+) GGTGT(A/C/G)TGGGC intron-variant
rs2962301 -- 181,004,618(-) AGATC(C/T)GAAGA intron-variant
rs2962303 -- 181,003,996(-) TGCTC(C/T)CCTCC intron-variant
rs4264912 -- 181,003,424(+) GAGAC(A/G)ATAAG intron-variant
rs4460107 -- 181,003,238(+) GTGGT(G/T)GTGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BTNL3 Gene

Variant ID Type Subtype PubMed ID
nsv428133 CNV Gain 18775914
nsv820020 CNV Loss 19587683
nsv830566 CNV Loss 17160897
nsv883299 CNV Gain 21882294
nsv10791 CNV Gain+Loss 18304495
dgv1066e199 CNV Deletion 23128226
nsv821169 CNV Deletion 20802225
nsv823367 CNV Loss 20364138
nsv513283 CNV Loss 21212237
esv29779 CNV Gain+Loss 19812545
nsv514338 CNV Complex 21397061
nsv819450 CNV Loss 19587683
esv2421695 CNV Deletion 20811451
nsv442972 CNV CNV 18776908
dgv1883e1 CNV Complex 17122850
nsv508390 CNV Loss 20534489
dgv988n67 CNV Loss 20364138
esv988906 CNV Gain 20482838
esv33360 CNV Gain 17666407
nsv471441 CNV Deletion 19718026
esv29991 CNV Gain 17803354
nsv509112 CNV Insertion 20534489

Relevant External Links for BTNL3 Gene

HapMap Linkage Disequilibrium report
BTNL3

Disorders for BTNL3 Gene

No disorders were found for BTNL3 Gene.

No data available for UniProtKB/Swiss-Prot for BTNL3 Gene

Publications for BTNL3 Gene

  1. Cloning, expression analysis, and chromosomal localization of a novel butyrophilin-like receptor. (PMID: 10429365) Shibui A. … Sugane K. (J. Hum. Genet. 1999) 2 3 4
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for BTNL3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate BTNL3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for BTNL3
    • Block miRNA regulation of BTNL3 using miScript Target Protectors

    Sources for BTNL3 Gene

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