BTN3A2 Gene
protein-coding GIFtS: 49
GCID: GC06P026365
|
|
butyrophilin, subfamily 3, member A2
| |
Aliases
for BTN3A2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Butyrophilin, Subfamily 3, Member A21 2 | | Butyrophilin Protein2 | | BTF42 3 5 | | Butyrophilin Subfamily 3 Member A22 | | BT3.22 3 | | BTF33 | | BT3.32 | | |
Export aliases for BTN3A2 gene to outside databasesPrevious GC identifers: GC06P026423 GC06P026473 GC06P026308 |
Summaries
for BTN3A2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for BTN3A2:
This gene encodes a member of the butyrophilin (BTN) family and the immunoglobulin (IG) superfamily. The gene residesin the juxta-telomeric region of the major histocompatability class 1 locus and is clustered with the other six familymembers, including BTN, BTN2A1, BTN2A2, BTN2A3, BTN3A1, and BTN3A3, on chromosome 6. The full-length protein encodedby this gene is a type I membrane protein. Alternatively spliced transcript variants encoding different isoforms havebeen found for this gene. (provided by RefSeq, Oct 2010)
UniProtKB/Swiss-Prot: BT3A2_HUMAN, P78410Function: Plays a role in T-cell responses in the adaptive immune response. Inhibits the release of IFNG from activatedT-cells
|
Genomic Views
for BTN3A2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000006.11 NC_018917.1 NT_007592.15
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the BTN3A2 gene promoter:
POU2F1 POU2F1a
Other transcription factors
Search SABiosciences Chromatin IP Primers for BTN3A2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BTN3A2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6p22.1 Ensembl cytogenetic band: 6p22.2 HGNC cytogenetic band: 6p22.1BTN3A2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P026365: view genomic region
(about GC identifiers)
Start:
|
26,365,387 bp from pter |
End:
|
26,378,548 bp from pter |
Size:
|
13,162 bases |
Orientation:
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plus strand |
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Proteins
for BTN3A2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: BT3A2_HUMAN, P78410 (See
protein sequence)Recommended Name: Butyrophilin subfamily 3 member A2 precursor Size: 334 amino acids; 36428 Da
Subunit: Homodimer
Subcellular location: Cell membrane; Single-pass type I membrane protein
Sequence caution: Sequence=AAB53424.1; Type=Frameshift; Positions=317; Sequence=AAC02652.1; Type=Frameshift;Positions=334; Sequence=AAC02655.1; Type=Frameshift; Positions=334;
1 PDB 3D structure from  and Proteopedia  for BTN3A2:4F8Q (3D)
Secondary accessions: B4DRT7 B4E103 F5H791 F8W6E0 O00477 O15338 O75658 Q76PA0 Q9BU81 Q9NR44Alternative splicing: 3 isoforms: P78410-1 P78410-2 P78410-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for BTN3A2: NX_P78410
Post-translational modifications:
N-glycosylated1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_P78410
BTN3A2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (5 alternative transcripts):
NP_001184175.1 NP_001184176.1 NP_001184177.1 NP_001184178.1 NP_008978.2
ENSEMBL proteins: ENSP00000435952 ENSP00000434102 ENSP00000433749 ENSP00000433880 ENSP00000432138 ENSP00000348751 ENSP00000366937 ENSP00000380152 ENSP00000380140 ENSP00000442687
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
IDA | -- | | GO:0016021 | integral to membrane |
IEA | -- |
BTN3A2 for ontologies About GeneDecksing
BTN3A2 Antibody Products:
Assay Products for BTN3A2: |
Protein
Domains /
Families
for BTN3A2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
BTN3A2 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry P78410ProtoNet protein and cluster: P78410 2 Blocks protein families: IPB003599 Immunoglobulin subtype IPB013106 Immunoglobulin V-set
UniProtKB/Swiss-Prot: BT3A2_HUMAN, P78410Similarity: Belongs to the immunoglobulin superfamily. BTN/MOG familySimilarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain |
Function
for BTN3A2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: BT3A2_HUMAN, P78410Function: Plays a role in T-cell responses in the adaptive immune response. Inhibits the release of IFNG from activatedT-cells Genatlas biochemistry entry for BTN3A2:butyrophilin subfamily 3,member A2,B box family of proteins,involved in cell proliferation and development
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BTN3A2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BTN3A2
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTN3A2 |
|
Pathways & Interactions
for BTN3A2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BTN3A2
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
1 Interacting protein for BTN3A2 (ENSP000003487514) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002456 | T cell mediated immunity |
IMP | -- | | GO:0008150 | biological_process |
-- | -- | | GO:0072643 | interferon-gamma secretion |
IMP | -- |
BTN3A2 for ontologies About GeneDecksing
|
Drugs & Compounds
for BTN3A2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for BTN3A2
Search CenterWatch for drugs/clinical trials and news about BTN3A2 / BT3A2
|
Transcripts
for BTN3A2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for BTN3A2 gene (5 alternative transcripts): NM_001197246.1 NM_001197247.1 NM_001197248.1 NM_001197249.1 NM_007047.3 Unigene Cluster for BTN3A2: Butyrophilin, subfamily 3, member A2 Hs.376046 [show with all ESTs]Unigene Representative Sequence: NM_00119724718 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000532865 ENST00000530653 ENST00000527417 ENST00000524682 ENST00000528222
ENST00000524459 ENST00000532627 ENST00000527422 ENST00000356386(uc010jqh.2 uc003nhp.3 uc011dkd.2 uc011dke.2 uc010jqi.2)
ENST00000528541 ENST00000377708 ENST00000396948 ENST00000532994 ENST00000532294
ENST00000531055 ENST00000527639 ENST00000396934 ENST00000508906
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BTN3A2 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BTN3A2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 5): BTN3A2 (NM_001197248) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BTN3A2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BTN3A2 |
Additional cDNA sequence: AF257505.1 AK290880.1 AK299417.1 AK303600.1 AK312847.1 BC002832.2 BC020214.1 BC067086.1 U90143.1 U90144.1 U90546.1 24/29 DOTS entries (see all 29): DT.87017064 DT.100779838 DT.95160556 DT.92446085 DT.87017067 DT.92446079 DT.91719140 DT.80100198 DT.40108757 DT.121381038 DT.100800856 DT.121381024 DT.100721314 DT.97847081 DT.100815709 DT.121380990 DT.91823349 DT.95160554 DT.97773634 DT.100799407 DT.102826559 DT.121381053 DT.121381132 DT.92446083 24/188 AceView cDNA sequences (see all 188): AA565010 BM712980 NM_007047 AA503799 BE741117 U90546 BE673518 BC067086 AA173162 BC002832 CR626326 AI123880 BE243465 AI273068 BM972781 BE858415 AI805263 BI766909 AI973228 AW074335 AA501997 AW368001 BE672833 AI299603
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for BTN3A2 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | |
| SP2: | | | | | - | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for BTN3A2
|
Expression
for BTN3A2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| BTN3A2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See BTN3A2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for BTN3A2
SOURCE GeneReport for Unigene cluster: Hs.376046
UniProtKB/Swiss-Prot: BT3A2_HUMAN, P78410Tissue specificity: Detected in T-cells and natural killer cells
SABiosciences Custom PCR Arrays for BTN3A2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BTN3A2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat BTN3A2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BTN3A2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BTN3A2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTN3A2 |
Orthologs
for BTN3A2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for BTN3A2 gene from 1/7 species (see all 7) About this table
ENSEMBL Gene Tree for BTN3A2 (if available)
TreeFam Gene Tree for BTN3A2 (if available) |
Paralogs
for BTN3A2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for BTN3A2 gene
- BTN2A12 BTNL82 ERMAP2 BTN3A32 BTN2A22 HHLA22 CD2762 BTNL102
- MOG2 BTNL22 BTN3A12 VTCN12 BTN1A12 BTNL92 BTNL32
14 SIMAP similar genes for BTN3A2 using alignment to 5 protein entries: BT3A2_HUMAN (see all proteins):BTN3A3 BTN3A1 BT3.3 BTN2A1 BTNL9 MOG
BTNL3 BTN2A2 BTN1A1 BTNL8 BTNL2 BTNL10
SKINT1 CD276
BTN3A2 for paralogs About GeneDecksing
|
Genomic Variants
for BTN3A2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 6 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for BTN3A2 (26365387 - 26378548 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for BTN3A2: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BTN3A2 |
|
Disorders
/ Diseases
for BTN3A2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
BTN3A2 for disorders About GeneDecksing
OMIM gene information: 613594
OMIM disorders: --
2  diseases for BTN3A2: About MalaCardshemochromatosis schizophrenia
Human Genome Epidemiology (HuGE) Navigator: BTN3A2 (3 documents)
Export disorders for BTN3A2 gene to outside databases
|
Publications
for BTN3A2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for BTN3A2 gene, integrated from 9 sources (see all 22):
(articles sorted by number of sources associating them with BTN3A2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A 1.1-Mb transcript map of the hereditary hemochromatosis locus. (PubMed id 9149941)1, 2, 3 Ruddy D.A.... Feder J.N. (1997)
- Cloning, localization, and structure of new members of the butyrophilin gene family in the juxta-telomeric region of the major histocompatibility complex. (PubMed id 9382921)1, 2, 9 Tazi-Ahnini R....Pontarotti P. (1997)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
- The cluster of BTN genes in the extended major histocompatibility complex. (PubMed id 11170752)1, 2 Rhodes D.A.... Trowsdale J. (2001)
- BTN3A2 expression in epithelial ovarian cancer is asso ciated with higher tumor infiltrating T cells and a better prognosis. (PubMed id 22685580)1 Le Page C....Cailhier J.F. (2012)
- The molecular basis for modulation of human Vgamma9Vdelta2 T cell responses by CD277/butyrophilin-3 (BTN3A)-specific antibodies. (PubMed id 22846996)2 Palakodeti A.... Adams E.J. (2012)
- Key implication of CD277/butyrophilin-3 (BTN3A) in cellular stress sensing by a major human gammadelta T-cell subset. (PubMed id 22767497)2 Harly C.... Scotet E. (2012)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
|
External Searches for BTN3A2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing BTN3A2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing BTN3A2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BTN3A2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for BTN3A2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for BTN3A2 gene:
Search GeneIP for patents involving BTN3A2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for BTN3A2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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