Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BTF3P11 Gene

Subcategory (RNA class) for BTF3P11 Gene

lncRNA

Aliases for BTF3P11 Gene

  • Basic Transcription Factor 3 Pseudogene 11 2 3 5
  • Basic Transcription Factor 3-Like 1, Pseudogene 2 3
  • Basic Transcription Factor 3, Like 1 2 3
  • BTF3 Homologue 2 3
  • Lambda H27A 2 3
  • Basic Transcription Factor 3, Like 1 Pseudogene 2
  • TNFRSF11B 3
  • HUMBTFB 3
  • BTF3L1 3
  • OCIF 3
  • OPG 3

External Ids for BTF3P11 Gene

ORGUL Members for BTF3P11 Gene

Previous HGNC Symbols for BTF3P11 Gene

  • BTF3L1

Previous GeneCards Identifiers for BTF3P11 Gene

  • GC13P077503
  • GC13P077504

Summaries for BTF3P11 Gene

GeneCards Summary for BTF3P11 Gene

BTF3P11 (Basic Transcription Factor 3 Pseudogene 11) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for BTF3P11 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for BTF3P11

Additional gene information for BTF3P11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for BTF3P11 Gene

Genomics for BTF3P11 Gene

Regulatory Elements for BTF3P11 Gene

Enhancers for BTF3P11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H076917 1.1 Ensembl ENCODE 0.4 -10.1 -10149 1.2 HDAC1 ATF1 ARNT NFRKB TCF12 EGR1 ATF7 IKZF2 CEBPB NCOA1 ACOD1 CLN5 BTF3P11 ENSG00000278727
GH13H076936 0.8 Ensembl ENCODE 0.4 +9.5 9515 1.4 JUND JUN CEBPB FOS MAFK CLN5 FBXL3 BTF3P11 LOC105370269
GH13H076903 0.7 ENCODE 0.3 -24.3 -24325 0.2 CTCF RB1 MAX RAD21 GATA3 SCRT2 SMC3 ZNF143 ZNF391 SCRT1 ACOD1 ENSG00000278727 BTF3P11
GH13H076939 0.4 FANTOM5 0.4 +11.4 11354 0.4 KCTD12 LOC105370269 BTF3P11
GH13H076940 0.3 FANTOM5 0.4 +12.4 12398 0.2 LOC105370269 BTF3P11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BTF3P11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BTF3P11 Gene

Genomic Locations for BTF3P11 Gene
chr13:76,928,066-76,929,090
(GRCh38/hg38)
Size:
1,025 bases
Orientation:
Plus strand
chr13:77,502,200-77,503,224
(GRCh37/hg19)

Genomic View for BTF3P11 Gene

Genes around BTF3P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BTF3P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BTF3P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTF3P11 Gene

ORGUL Member Location for BTF3P11 Gene

ORGUL Member Location for BTF3P11 gene

Proteins for BTF3P11 Gene

Post-translational modifications for BTF3P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BTF3P11 Gene

Domains & Families for BTF3P11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BTF3P11 Gene

Function for BTF3P11 Gene

Phenotypes From GWAS Catalog for BTF3P11 Gene

genes like me logo Genes that share phenotypes with BTF3P11: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BTF3P11 Gene

Localization for BTF3P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BTF3P11 Gene

Pathways & Interactions for BTF3P11 Gene

SuperPathways for BTF3P11 Gene

No Data Available

Interacting Proteins for BTF3P11 Gene

Gene Ontology (GO) - Biological Process for BTF3P11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BTF3P11 Gene

Drugs & Compounds for BTF3P11 Gene

No Compound Related Data Available

Transcripts for BTF3P11 Gene

fRNAdb Secondary structures for BTF3P11 Gene

  • FR395528

mRNA/cDNA for BTF3P11 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BTF3P11 Gene

No ASD Table

Relevant External Links for BTF3P11 Gene

GeneLoc Exon Structure for
BTF3P11
ECgene alternative splicing isoforms for
BTF3P11

Expression for BTF3P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BTF3P11 Gene

NURSA nuclear receptor signaling pathways regulating expression of BTF3P11 Gene:

BTF3P11

SOURCE GeneReport for Unigene cluster for BTF3P11 Gene:

Hs.567241
genes like me logo Genes that share expression patterns with BTF3P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BTF3P11 Gene

Orthologs for BTF3P11 Gene

Evolution for BTF3P11 Gene

ENSEMBL:
Gene Tree for BTF3P11 (if available)
TreeFam:
Gene Tree for BTF3P11 (if available)

No data available for Orthologs for BTF3P11 Gene

Paralogs for BTF3P11 Gene

No data available for Paralogs for BTF3P11 Gene

Variants for BTF3P11 Gene

Sequence variations from dbSNP and Humsavar for BTF3P11 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1002927262 -- 76,929,121(+) TGTGT(A/G)TGTGT downstream-variant-500B
rs1003262734 -- 76,927,488(+) AAAAA(A/T)AGAAT upstream-variant-2KB
rs1003453559 -- 76,927,231(+) AACAC(A/C)TGGAC upstream-variant-2KB
rs1006149379 -- 76,929,510(+) GAGGG(C/T)AAAGG downstream-variant-500B
rs1006213688 -- 76,926,464(+) GAACA(C/T)ACTTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BTF3P11 Gene

Variant ID Type Subtype PubMed ID
nsv974102 CNV duplication 23825009
nsv832652 CNV gain 17160897
nsv832651 CNV gain 17160897

Relevant External Links for BTF3P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BTF3P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BTF3P11 Gene

Disorders for BTF3P11 Gene

Relevant External Links for BTF3P11

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BTF3P11

No disorders were found for BTF3P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BTF3P11 Gene

Publications for BTF3P11 Gene

  1. The visual assignment of genes by fiber-fish: BTF3 protein homologue gene (BTF3) and a novel pseudogene of human RNA helicase A (DDX9P) on 13q22. (PMID: 9325059) Klockars T … Peltonen L (Genomics 1997) 2 3 60
  2. Genomic structure of the putative BTF3 transcription factor. (PMID: 1386332) Kanno M … Egly JM (Gene 1992) 2 3 60
  3. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD. (PMID: 25158072) Yu D … Pauls DL (The American journal of psychiatry 2015) 3 60
  4. Salt-inducible kinase 3, SIK3, is a new gene associated with hearing. (PMID: 25060954) Wolber LE … Williams FM (Human molecular genetics 2014) 3 60
  5. Multiple genetic loci for bone mineral density and fractures. (PMID: 18445777) Styrkarsdottir U … Stefansson K (The New England journal of medicine 2008) 3 60

Products for BTF3P11 Gene

Sources for BTF3P11 Gene

Content
Loading form....