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Aliases for BTF3P11 Gene

Subcategory (RNA class) for BTF3P11 Gene

lncRNA

Aliases for BTF3P11 Gene

  • Basic Transcription Factor 3 Pseudogene 11 2 3
  • Basic Transcription Factor 3-Like 1, Pseudogene 2 3
  • Basic Transcription Factor 3, Like 1 Pseudogene 2 3
  • BTF3 Homologue 2 3
  • Lambda H27A 2 3
  • TNFRSF11B 3 6
  • OCIF 3 6
  • OPG 3 6
  • Basic Transcription Factor 3, Like 1 2
  • HUMBTFB 3
  • BTF3L1 3

External Ids for BTF3P11 Gene

ORGUL Members for BTF3P11 Gene

Previous Symbols for BTF3P11 Gene

  • BTF3L1

Summaries for BTF3P11 Gene

GeneCards Summary for BTF3P11 Gene

BTF3P11 (Basic Transcription Factor 3 Pseudogene 11) is a Pseudogene, and belongs to the lncRNA class. Among its related pathways are Osteoblast Signaling and Transcription_Role of VDR in regulation of genes involved in osteoporosis.

fRNAdb sequence ontologies for BTF3P11 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for BTF3P11

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for BTF3P11 Gene

Genomics for BTF3P11 Gene

Genomic Location for BTF3P11 Gene

Start:
76,928,066 bp from pter
End:
76,929,090 bp from pter
Size:
1,025 bases
Orientation:
Plus strand

Genomic View for BTF3P11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BTF3P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTF3P11 Gene

ORGUL Member Location for BTF3P11 Gene

ORGUL Member Location for BTF3P11 gene

No data available for Regulatory Elements for BTF3P11 Gene

Proteins for BTF3P11 Gene

Post-translational modifications for BTF3P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BTF3P11 Gene

Domains for BTF3P11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BTF3P11 Gene

Function for BTF3P11 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BTF3P11 Gene

Localization for BTF3P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BTF3P11 Gene

Transcripts for BTF3P11 Gene

fRNAdb Secondary structures for BTF3P11 Gene

  • FR395528

mRNA/cDNA for BTF3P11 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BTF3P11 Gene

No ASD Table

Relevant External Links for BTF3P11 Gene

GeneLoc Exon Structure for
BTF3P11
ECgene alternative splicing isoforms for
BTF3P11

Expression for BTF3P11 Gene

mRNA expression in normal human tissues for BTF3P11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for BTF3P11 Gene Hs.567241

genes like me logo Genes that share expressions with BTF3P11: view

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for BTF3P11 Gene

Orthologs for BTF3P11 Gene

Evolution for BTF3P11 Gene

ENSEMBL:
Gene Tree for BTF3P11 (if available)
TreeFam:
Gene Tree for BTF3P11 (if available)

No data available for Orthologs for BTF3P11 Gene

Paralogs for BTF3P11 Gene

No data available for Paralogs for BTF3P11 Gene

Variants for BTF3P11 Gene

Sequence variations from dbSNP and Humsavar for BTF3P11 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs583970 -- 76,928,897(+) TTTAT(A/G)TTATG nc-transcript-variant
rs596643 -- 76,929,406(+) ttcac(A/G)ctaat downstream-variant-500B
rs596724 -- 76,929,471(+) acagt(G/T)ccaca downstream-variant-500B
rs653901 -- 76,928,102(+) CCAAA(C/T)GGCAA upstream-variant-2KB
rs660056 -- 76,926,459(+) ATCTG(A/G)AACAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BTF3P11 Gene

Variant ID Type Subtype PubMed ID
nsv832651 CNV Gain 17160897
nsv832652 CNV Gain 17160897

Relevant External Links for BTF3P11 Gene

HapMap Linkage Disequilibrium report
BTF3P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BTF3P11 Gene

Disorders for BTF3P11 Gene

No disorders were found for BTF3P11 Gene.

No data available for UniProtKB/Swiss-Prot for BTF3P11 Gene

Publications for BTF3P11 Gene

  1. Genomic structure of the putative BTF3 transcription factor. (PMID: 1386332) Kanno M. … Egly J.-M. (Gene 1992) 2 3
  2. The visual assignment of genes by fiber-fish: BTF3 protein homologue gene (BTF3) and a novel pseudogene of human RNA helicase A (DDX9P) on 13q22. (PMID: 9325059) Klockars T. … Peltonen L. (Genomics 1997) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Multiple genetic loci for bone mineral density and fractures. (PMID: 18445777) Styrkarsdottir U. … Stefansson K. (N. Engl. J. Med. 2008) 3

Products for BTF3P11 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate BTF3P11
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for BTF3P11
    • Block miRNA regulation of BTF3P11 using miScript Target Protectors

    Sources for BTF3P11 Gene

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