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BTF3L4 Gene

protein-coding   GIFtS: 46
GCID: GC01P052521

Basic Transcription Factor 3-Like 4

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Basic Transcription Factor 3-Like 41 2 3
Transcription Factor BTF3 Homolog 42

External Ids:    HGNC: 305471   Entrez Gene: 914082   Ensembl: ENSG000001347177   UniProtKB: Q96K173   

Export aliases for BTF3L4 gene to outside databases

Previous GC identifers: GC01P052234 GC01P052294 GC01P050639


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for BTF3L4 Gene:
BTF3L4 (basic transcription factor 3-like 4) is a protein-coding gene. An important paralog of this gene is BTF3.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NC_018912.2  NT_032977.10  
Regulatory elements:
   Regulatory transcription factor binding sites in the BTF3L4 gene promoter:
         Elk-1   Sox5   RFX1   HOXA3   AML1a   IRF-1   IRF-2   c-Myb   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidBTF3L4 promoter sequence
   Search Chromatin IP Primers for BTF3L4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat BTF3L4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p32.3   Ensembl cytogenetic band:  1p32.3   HGNC cytogenetic band: 1p32.3

BTF3L4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BTF3L4 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P052521:  view genomic region     (about GC identifiers)

Start:
52,521,797 bp from pter      End:
52,556,388 bp from pter
Size:
34,592 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: BT3L4_HUMAN, Q96K17 (See protein sequence)
Recommended Name: Transcription factor BTF3 homolog 4  
Size: 158 amino acids; 17271 Da
Secondary accessions: B3KNJ1 D3DQ32 G3V1C6
Alternative splicing: 3 isoforms:  Q96K17-1   Q96K17-2   Q96K17-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for BTF3L4: NX_Q96K17

Explore proteomics data for BTF3L4 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys8, Lys115
  • Modification sites at PhosphoSitePlus

  • See BTF3L4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001129969.1  NP_001230696.1  NP_689478.1  

    ENSEMBL proteins: 
     ENSP00000360664   ENSP00000434611   ENSP00000434824   ENSP00000436712   ENSP00000433418  

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    antibodies-online proteins for BTF3L4 (6 products) 

     
    antibodies-online peptides for BTF3L4

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    antibodies-online antibodies for BTF3L4 (17 products) 

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    antibodies-online kits for BTF3L4 (8 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR002715 Nas_poly-pep-assoc_cplx_dom

    Graphical View of Domain Structure for InterPro Entry Q96K17

    ProtoNet protein and cluster: Q96K17

    1 Blocks protein domain: IPB002715 Nascent polypeptide-associated complex NAC

    UniProtKB/Swiss-Prot: BT3L4_HUMAN, Q96K17
    Similarity: Belongs to the NAC-beta family
    Similarity: Contains 1 NAC-A/B (NAC-alpha/beta) domain


    Find genes that share domains with BTF3L4           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for BTF3L4

    miRNA
    Products:
        
    miRTarBase miRNAs that target BTF3L4:
    hsa-mir-192-5p (MIRT026362), hsa-mir-34a-5p (MIRT025325), hsa-mir-218-5p (MIRT024236), hsa-mir-186-5p (MIRT045296)

    Block miRNA regulation of human, mouse, rat BTF3L4 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate BTF3L4 (see all 68):
    hsa-miR-548j hsa-miR-3607-3p hsa-miR-3194-5p hsa-miR-300 hsa-miR-371-5p hsa-miR-519a hsa-miR-877* hsa-miR-3613-3p
    SwitchGear 3'UTR luciferase reporter plasmidBTF3L4 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTF3L4


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    mitochondrion2
    cytosol1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for BTF3L4
    Interactions:

        Search GeneGlobe Interaction Network for BTF3L4

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for BTF3L4 (BT3L4)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for BTF3L4 gene (3 alternative transcripts): 
    NM_001136497.2  NM_001243767.1  NM_152265.4  

    Unigene Cluster for BTF3L4:

    Basic transcription factor 3-like 4
    Hs.429839  [show with all ESTs]
    Unigene Representative Sequence: NM_152265
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000313334(uc001ctk.3 uc001ctl.3 uc010onh.2) ENST00000477828
    ENST00000489308 ENST00000526132 ENST00000472944 ENST00000524414 ENST00000484036
    ENST00000533836
    miRNA
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    Block miRNA regulation of human, mouse, rat BTF3L4 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate BTF3L4 (see all 68):
    hsa-miR-548j hsa-miR-3607-3p hsa-miR-3194-5p hsa-miR-300 hsa-miR-371-5p hsa-miR-519a hsa-miR-877* hsa-miR-3613-3p
    SwitchGear 3'UTR luciferase reporter plasmidBTF3L4 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat BTF3L4
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for BTF3L4
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BTF3L4
    Primer
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    OriGene qPCR primer pairs and template standards for BTF3L4
    OriGene qSTAR qPCR primer pairs in human, mouse for BTF3L4
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat BTF3L4
      QuantiTect SYBR Green Assays in human, mouse, rat BTF3L4
      QuantiFast Probe-based Assays in human, mouse, rat BTF3L4

    Additional mRNA sequence: 

    AK027582.1 AK027750.1 BC021004.1 BC022371.1 BC070378.1 

    23 DOTS entries:

    DT.92410131  DT.86859299  DT.100820002  DT.102831610  DT.99932247  DT.408195  DT.97844981  DT.99960939 
    DT.100819996  DT.121387183  DT.437623  DT.121387108  DT.121387171  DT.92440193  DT.100819998  DT.100830610 
    DT.121387114  DT.121387161  DT.95149933  DT.95358320  DT.100820000  DT.121139678  DT.121387170 

    Selected AceView cDNA sequences (see all 245):

    BM451295 AL560185 CA311647 BG032664 AI346507 CR617527 BE888156 BX112001 
    BM693269 AI867833 F02776 AI653085 AA927894 AI005312 BF940498 BX337762 
    BX337763 BF968617 AW026579 BQ716301 BX418992 BX280667 AK027582 BX366132 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for BTF3L4    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b
    SP1:                    -           -     -                           
    SP2:                                            -                     
    SP3:                                                                  
    SP4:                    -                                             


    ECgene alternative splicing isoforms for BTF3L4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    BTF3L4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GAGAACATCA
    BTF3L4 Expression
    About this image


    BTF3L4 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
     
     Neural Tube (Nervous System)    fully expand to see all 2 entries
             Metencephalon
     
     Thymus (Hematopoietic System)
             Thymus
     
     Kidney (Urinary System)
             Metanephros
    BTF3L4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    BTF3L4 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.429839
        Custom PCR Arrays for BTF3L4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTF3L4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for BTF3L4 gene from Selected species (see all 16)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Btf3l41 , 5 basic transcription factor 3-like 41, 5 93.88(n)1
    100(a)1
      4 (50.64 cM)5
    705331  NM_027453.21  NP_081729.11 
     1088142955 
    chicken
    (Gallus gallus)
    Aves BTF3L41 basic transcription factor 3-like 4 88.19(n)
    98.73(a)
      424638  NM_001031285.1  NP_001026456.1 
    lizard
    (Anolis carolinensis)
    Reptilia BTF3L46
    basic transcription factor 3-like 4
    99(a)
    1 ↔ 1
    4(114394738-114405538)
    African clawed frog
    (Xenopus laevis)
    Amphibia BJ618775.12   -- 80.34(n)    BJ618775.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1000060971 transcription factor BTF3 homolog 4-like 80.8(n)
    96.2(a)
      100006097  XM_005155780.1  XP_005155837.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta bic6
    CG118356
    --
    61(a)
    13(a)
    many ↔ many
    many ↔ many
    2R(8757742-8759299)
    2L(560568-563347)
    worm
    (Caenorhabditis elegans)
    Secernentea icd-11 icd-1 65.29(n)
    72.41(a)
      174090  NM_062935.6  NP_495336.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes EGD1(YPL037C)4 Subunit beta1 of the nascent polypeptide-associated more   --   16(481901-481428) 856070  NP_015288.1 


    ENSEMBL Gene Tree for BTF3L4 (if available)
    TreeFam Gene Tree for BTF3L4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for BTF3L4 gene
    BTF32  
    1 SIMAP similar gene for BTF3L4 using alignment to 4 protein entries:     BT3L4_HUMAN (see all proteins):
    BTF3

    Find genes that share paralogs with BTF3L4           About GenesLikeMe


    5 Pseudogenes.org Pseudogenes for BTF3L4
    PGOHUM00000239398 PGOHUM00000239042 PGOHUM00000241001 PGOHUM00000250739 PGOHUM00000243392


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for BTF3L4 (see all 650)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs120726661,2
    C,H--52523846(+) TAAGTC/TTATGG 3 -- int14Minor allele frequency- T:0.00NS EA 416
    rs1479043351,2
    --52523914(+) CTCCTA/GTAAAA 3 -- int10--------
    rs1921003481,2
    --52524081(+) ATTATA/GTAGTC 3 -- int10--------
    rs793888621,2
    F--52524108(+) TTAATC/GTCTCA 3 -- int11Minor allele frequency- G:0.07WA 118
    rs1415414461,2
    --52524109(+) TAATCC/TCTCAA 3 -- int10--------
    rs1846978941,2
    --52524171(+) AGAATC/TGGCCA 3 -- int10--------
    rs1436793001,2
    --52524173(+) AATTGA/GCCAAA 3 -- int10--------
    rs774970351,2
    F--52524200(+) CCTAGT/GCCCTT 3 -- int11Minor allele frequency- G:0.13WA 118
    rs1126952381,2
    C,F--52524295(+) TGAGAC/TGGAGT 3 -- int11Minor allele frequency- T:0.50WA 2
    rs1420243711,2
    --52524351(+) TCACCA/GCAACC 3 -- int10--------

    HapMap Linkage Disequilibrium report for BTF3L4 (52521797 - 52556388 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for BTF3L4:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv829848CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing BTF3L4
    DNA2.0 Custom Variant and Variant Library Synthesis for BTF3L4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for BTF3L4 gene, integrated from 10 sources (see all 16):
    (articles sorted by number of sources associating them with BTF3L4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    5. Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (J. Proteome Res. 2012)
    6. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    8. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    9. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 91408 HGNC: 30547 AceView: MGC23908 Ensembl:ENSG00000134717 euGenes: HUgn91408
    ECgene: BTF3L4 H-InvDB: BTF3L4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for BTF3L4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for BTF3L4 gene:
    Search GeneIP for patents involving BTF3L4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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