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Aliases & Descriptions for BTC
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| OTTHUMP00000160600 2 | | betacellulin 2 |
| | |
| | Search outside databases for aliases for BTC genePrevious GC identifers: GC04M075557 GC04M075843 GC04M076062 GC04M076128 GC04M076129 GC04M076027 |
Summaries for BTC(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for BTC: The protein encoded by this gene is a member of the EGF family of growth factors. It is synthesized primarily as a transmembrane precursor, which is then processed to mature molecule by proteolytic events. This protein is a ligand for the EGF receptor. [provided by RefSeq] UniProtKB/Swiss-Prot: BTC_HUMAN, P35070Function: Potent mitogen for retinal pigment epithelial cells and vascular smooth muscle cells. The effects of betacellulin are probably mediated by the EGF receptor and other related receptors |
Genomic Location for BTC
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the BTC gene 
Entrez Gene cytogenetic band: 4q13-q21 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13-q21BTC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M075889:
(about GC identifiers)
Start:
|
75,888,993 bp from pter |
End:
|
75,938,920 bp from pter |
Size:
|
49,928 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000004.10 NT_016354.18
| Proteins for BTC
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: BTC_HUMAN, P35070 (See
protein sequence)Recommended Name: Probetacellulin precursor Size: 178 amino acids; 19746 Da
Subunit: Monomer
Subcellular location: Betacellulin: Secreted, extracellular space
Subcellular location: Probetacellulin: Cell membrane; Single-pass type I membrane protein
PDB structure from and Proteopedia :1IOX (3D)
 1IP0 (3D)
 
Secondary accessions: Q96F48REFSEQ proteins: NP_001720.1
ENSEMBL proteins: ENSP00000379092 ENSP00000312050
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for BTC: Assays for BTC: | Protein
Domains/ Families for BTC(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P35070
ProtoNet protein and cluster: P35070 2 Blocks protein families: IPB001336 Type I EGF signature IPB006210 Type I EGF
UniProtKB/Swiss-Prot: BTC_HUMAN, P35070Similarity: Contains 1 EGF-like domain | Gene Function for BTC
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001729
Applied Biosystems Silencer® siRNAs for BTC
Sigma-Aldrich siRNA and siRNA Panels for BTC  Sigma-Aldrich shRNA for BTC  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001729                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001729                                  untagged cDNA clone in CMV expression vector: NM_001729 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001729
UniProtKB/Swiss-Prot: BTC_HUMAN, P35070Function: Potent mitogen for retinal pigment epithelial cells and vascular smooth muscle cells. The effects of betacellulin are probably mediated by the EGF receptor and other related receptorsGenatlas biochemistry entry for BTC:betacellulin,ECF family7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Btc):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for BTC
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for BTC (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for BTC 
5/11 Interacting proteins for BTC (ENSP000003120503) via UniProtKB, MINT, and/or STRING (see all 11
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008284 | positive regulation of cell proliferation |
TAS | 8144591 | | GO:0043066 | negative regulation of apoptosis |
IEA | -- | About this table
|
Drugs & Compounds for BTC(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for BTC 10 Novoseek chemical compound relationships for BTC gene
About this table
|
Transcripts for BTC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001729
Sigma-Aldrich siRNA and siRNA Panels for BTC  Sigma-Aldrich shRNA for BTC  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001729 REFSEQ mRNAs for BTC gene: NM_001729.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001729               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001729                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001729                                  untagged cDNA clone in CMV expression vector: NM_001729  Additional cDNA sequence: AB109441.1 S55606.1 2 DOTS entries: DT.204260 DT.92416550 18 AceView cDNA sequences:AB109441 BX493533 AA917900 BE899442 NM_001729 AI822020 CB121982 S55606 BC011618 AI792829 BX646859 AI277656 BG194271 AI766016 BF382080 BI552049 AW129759 BI758136
highest scoring ESTs for BTC:S55606 AA917900 AB109441 AI766016 AI792829 AI822020 BC011618 BE899442 BX493533 AA148418 Unigene Cluster for BTC: Betacellulin Hs.710156 [show with all ESTs]Unigene Representative Sequence: NM_001729
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000395743
ENST00000311727
|
Expression for BTC
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| BTC expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for BTC
1 / 2 / 3 6 probe-sets matching BTC gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGATAGCTAT
SOURCE GeneReport for Unigene cluster: Hs.710156
Expression variation in blood from EXPOLDB for BTC UniProtKB/Swiss-Prot: BTC_HUMAN, P35070Tissue specificity: Synthesized in several tissues and tumor cells. Predominantly expressed in pancreas and small intestine |
Orthologs for BTC
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for BTC gene from 5/7 species (see all 7
)
About this table Species with no ortholog for BTC
ENSEMBL Gene Tree for BTC | Paralogs for BTC(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for BTC gene
- TGFA2 C9orf302 TMEFF22
|
SNPs/Variants for BTC(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for BTC (up to first 250kb)
|
Disorders & Mutations for BTC
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600345
UniProtKB/Swiss-Prot: BTC_HUMAN, P35070
Betacellulin from beta cells could play a role in the vascular complications associated with diabetes10/15 Novoseek disease relationships for BTC gene (see all 15
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| insulinoma |
56.78 |
14 |
8439318 (2), 10724350 (2), 8283650 (1), 17260022 (1) (see all 6) |
| hnscc |
53.73 |
8 |
15197768 (3), 11072245 (1), 10706134 (1), 11235991 (1) |
| gastrointestinal tumor |
37.52 |
2 |
14530681 (1), 12790326 (1) |
| carcinoma squamous cell |
20.00 |
3 |
15197768 (1), 8144591 (1), 10706134 (1) |
| breast carcinoma |
17.19 |
1 |
9312020 (1) |
| tumors |
14.84 |
13 |
16949929 (5), 10601546 (2), 18289051 (1), 10797281 (1) (see all 5) |
| pancreatic cancer |
12.28 |
9 |
10601546 (6), 8980184 (1) |
| endometrial cancer |
10.28 |
2 |
16962163 (1), 10537356 (1) |
| breast cancer |
7.01 |
4 |
18949710 (1), 10022523 (1), 19026613 (1), 17962208 (1) |
| carcinoma |
4.76 |
6 |
9648926 (1), 11439355 (1), 8144591 (1), 8630011 (1) (see all 5) |
About this table
Human Gene Mutation Database: BTC Genetic Association Database: BTC Human Genome Epidemiology Navigator: BTC (7 documents)
|
Medical News for BTC(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for BTC (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/138 PubMed articles for BTC gene (see all 138
):- Cloning and expression of cDNA encoding human betacellulin, a new member of the EGF family. (PubMed id 8439318)1, 2, 3, 4 Sasada R.... Igarashi K. (1993)
- Human betacellulin, a member of the EGF family dominantly expressed in pancreas and small intestine, is fully active in a monomeric form. (PubMed id 8919026)1, 3, 4 Seno M.... Yamada H. (1996)
- The exon 1 Cys7Gly polymorphism within the betacellulin gene is associated with type 2 diabetes in African Americans. (PubMed id 15793259)1, 3, 6 Silver K....Mitchell B.D. (2005)
- Molecular scanning of the betacellulin gene for mutations in type 2 diabetic patients. (PubMed id 15936459)1, 3, 6 Nakagawa T....Nanjo K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Solution structure of betacellulin, a new member of EGF-family ligands. (PubMed id 12074582)3, 4 Miura K.... Kawano K. (2002)
- Novel betacellulin derivatives. Separation of the differentiation activity from the mitogenic activity. (PubMed id 11522793)2, 3 Itoh T....Fujino M. (2001)
- Changes in the expression and cytological localization of betacellulin and its receptors (ErbB-1 and ErbB-4) in the trophoblasts in human placenta over the course of pregnancy. (PubMed id 15248827)1, 3 Tanimura K....Maruo T. (2004)
- Differential activation of epidermal growth factor (EGF) receptor downstream signaling pathways by betacellulin and EGF. (PubMed id 15192046)1, 3 Saito T....Mori M. (2004)
- Immunohistochemical localization of Betacellulin, a member of epidermal growth factor family, in atherosclerotic plaques of human aorta. (PubMed id 11254912)1, 3 Tamura R....Matsuzawa Y. (2001)
|
Search for BTC
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing BTC
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing BTC
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BTC(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for BTC(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for BTC:

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| | | | Search Tocris compounds for BTC |
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Incremental update: 13 Oct 2009
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