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Aliases for BTBD9-AS1 Gene

Subcategory (RNA class) for BTBD9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BTBD9-AS1 Gene

  • BTBD9 Antisense RNA 1 2 3 5
  • BTBD9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BTBD9-AS1 Gene

Previous GeneCards Identifiers for BTBD9-AS1 Gene

  • GC06P038451
  • GC06P038550
  • GC06P038482
  • GC06P038645
  • GC06P038647
  • GC06P039031
  • GC06P039617
  • GC06P040178

Summaries for BTBD9-AS1 Gene

GeneCards Summary for BTBD9-AS1 Gene

BTBD9-AS1 (BTBD9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BTBD9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BTBD9-AS1 Gene

Genomics for BTBD9-AS1 Gene

GeneHancer (GH) Regulatory Elements for BTBD9-AS1 Gene

Promoters and enhancers for BTBD9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I037791 Enhancer 1.3 Ensembl ENCODE 9.3 -683.6 -683647 1 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 CMTR1 C6orf89 MDGA1 BTBD9-AS1 ENSG00000225945 GC06P042404
GH06I038212 Enhancer 1.1 Ensembl ENCODE 9.8 -262.2 -262204 1.3 FOXA2 INSM2 KLF17 ZNF76 FEZF1 ZNF2 ZNF335 GLIS2 ZNF213 ZNF366 BTBD9-AS1 SAYSD1 GC06P041387 LOC105375045 GC06M038473 BTBD9
GH06I038503 Enhancer 0.8 ENCODE 11.8 +28.2 28217 1.2 FOXA2 ZNF792 SAP130 ARID4B MZF1 YBX1 CEBPG ZSCAN9 ZFHX2 ZNF207 ANKRD18EP BTBD9-AS1 PIR44974 BTBD9
GH06I038502 Enhancer 0.8 ENCODE 10.8 +27.5 27464 0.1 FOXA2 ARID4B ZSCAN9 MIXL1 HMG20B CEBPB MIER2 KAT8 NFIL3 RCOR2 BTBD9-AS1 PIR44974 BTBD9
GH06I037987 Enhancer 0.9 Ensembl ENCODE 9.2 -485.4 -485436 4.4 ELF3 SOX13 FOXA2 ZNF792 SAP130 ZFP64 ZNF140 RARA TEAD3 ZSCAN5C RNU1-87P CMTR1 ENSG00000225945 ZFAND3 MDGA1 BTBD9-AS1 CCDC167 ENSG00000218521
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BTBD9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BTBD9-AS1 Gene

Genomic Locations for BTBD9-AS1 Gene
chr6:38,475,148-38,500,230
(GRCh38/hg38)
Size:
25,083 bases
Orientation:
Plus strand
chr6:38,449,372-38,450,307
(GRCh37/hg19)

Genomic View for BTBD9-AS1 Gene

Genes around BTBD9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BTBD9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BTBD9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTBD9-AS1 Gene

Proteins for BTBD9-AS1 Gene

Post-translational modifications for BTBD9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BTBD9-AS1 Gene

Domains & Families for BTBD9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BTBD9-AS1 Gene

Function for BTBD9-AS1 Gene

Phenotypes From GWAS Catalog for BTBD9-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BTBD9-AS1 Gene

Localization for BTBD9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BTBD9-AS1 Gene

Pathways & Interactions for BTBD9-AS1 Gene

SuperPathways for BTBD9-AS1 Gene

No Data Available

Interacting Proteins for BTBD9-AS1 Gene

Gene Ontology (GO) - Biological Process for BTBD9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BTBD9-AS1 Gene

Drugs & Compounds for BTBD9-AS1 Gene

No Compound Related Data Available

Transcripts for BTBD9-AS1 Gene

mRNA/cDNA for BTBD9-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BTBD9-AS1 Gene

No ASD Table

Relevant External Links for BTBD9-AS1 Gene

GeneLoc Exon Structure for
BTBD9-AS1
ECgene alternative splicing isoforms for
BTBD9-AS1

Expression for BTBD9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BTBD9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BTBD9-AS1 Gene

This gene is overexpressed in Testis (x40.7).
genes like me logo Genes that share expression patterns with BTBD9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BTBD9-AS1 Gene

Orthologs for BTBD9-AS1 Gene

Evolution for BTBD9-AS1 Gene

ENSEMBL:
Gene Tree for BTBD9-AS1 (if available)
TreeFam:
Gene Tree for BTBD9-AS1 (if available)

No data available for Orthologs for BTBD9-AS1 Gene

Paralogs for BTBD9-AS1 Gene

No data available for Paralogs for BTBD9-AS1 Gene

Variants for BTBD9-AS1 Gene

Sequence variations from dbSNP and Humsavar for BTBD9-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000132350 -- 38,479,822(+) G/A upstream_transcript_variant
rs1000233214 -- 38,484,528(+) G/A downstream_transcript_variant
rs1000835943 -- 38,484,254(+) T/C downstream_transcript_variant
rs1000844372 -- 38,484,163(+) A/G downstream_transcript_variant
rs1002080614 -- 38,484,150(+) T/C downstream_transcript_variant

Additional Variant Information for BTBD9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BTBD9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BTBD9-AS1 Gene

Disorders for BTBD9-AS1 Gene

Additional Disease Information for BTBD9-AS1

No disorders were found for BTBD9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BTBD9-AS1 Gene

Publications for BTBD9-AS1 Gene

No publications were found for BTBD9-AS1 Gene.

Products for BTBD9-AS1 Gene

Sources for BTBD9-AS1 Gene

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