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Aliases for BTBD9-AS1 Gene

Subcategory (RNA class) for BTBD9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BTBD9-AS1 Gene

  • BTBD9 Antisense RNA 1 2 3 5
  • BTBD9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BTBD9-AS1 Gene

Previous GeneCards Identifiers for BTBD9-AS1 Gene

  • GC06P038451
  • GC06P038550
  • GC06P038482
  • GC06P038645
  • GC06P038647
  • GC06P039031

Summaries for BTBD9-AS1 Gene

GeneCards Summary for BTBD9-AS1 Gene

BTBD9-AS1 (BTBD9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BTBD9-AS1 Gene

Genomics for BTBD9-AS1 Gene

Regulatory Elements for BTBD9-AS1 Gene

Enhancers for BTBD9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G037791 1.4 Ensembl ENCODE 9.3 -683.6 -683648 1.0 HDGF FOXA2 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 CMTR1 MDGA1 BTBD9-AS1 ENSG00000225945 GC06P041058
GH06G038212 1.1 Ensembl ENCODE 9.8 -262.2 -262204 1.3 ATF1 INSM2 ZNF76 KLF17 FEZF1 RAD21 ZNF2 GLIS2 ZNF366 CREM BTBD9-AS1 SAYSD1 GC06P039692 LOC105375045
GH06G037987 1.1 Ensembl ENCODE 9.2 -485.4 -485437 4.4 ELF3 SOX13 FOXA2 ZNF792 SAP130 ZFP64 ZNF140 RARA KAT2B TEAD3 RNU1-87P ENSG00000225945 ZFAND3 MDGA1 BTBD9-AS1 CCDC167 ENSG00000218521
GH06G038503 0.8 ENCODE 11.8 +28.2 28217 1.2 FOXA2 ZNF792 SAP130 ARID4B YBX1 CEBPG ZSCAN9 ZFHX2 ZNF207 PRDM10 ANKRD18EP BTBD9-AS1 PIR44974
GH06G038502 0.8 ENCODE 10.8 +27.5 27464 0.1 FOXA2 ARID4B ZSCAN9 ZNF207 MIXL1 HMG20B CEBPB MIER2 KAT8 CEBPA BTBD9-AS1 PIR44974
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BTBD9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BTBD9-AS1 Gene

Chromosome:
6
Start:
38,475,148 bp from pter
End:
38,500,230 bp from pter
Size:
25,083 bases
Orientation:
Plus strand

Genomic View for BTBD9-AS1 Gene

Genes around BTBD9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BTBD9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BTBD9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTBD9-AS1 Gene

Proteins for BTBD9-AS1 Gene

Post-translational modifications for BTBD9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BTBD9-AS1 Gene

Domains & Families for BTBD9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BTBD9-AS1 Gene

Function for BTBD9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BTBD9-AS1 Gene

Localization for BTBD9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BTBD9-AS1 Gene

Pathways & Interactions for BTBD9-AS1 Gene

SuperPathways for BTBD9-AS1 Gene

No Data Available

Interacting Proteins for BTBD9-AS1 Gene

Gene Ontology (GO) - Biological Process for BTBD9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BTBD9-AS1 Gene

Drugs & Compounds for BTBD9-AS1 Gene

No Compound Related Data Available

Transcripts for BTBD9-AS1 Gene

mRNA/cDNA for BTBD9-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BTBD9-AS1 Gene

No ASD Table

Relevant External Links for BTBD9-AS1 Gene

GeneLoc Exon Structure for
BTBD9-AS1
ECgene alternative splicing isoforms for
BTBD9-AS1

Expression for BTBD9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BTBD9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BTBD9-AS1 Gene

This gene is overexpressed in Testis (x40.7).
genes like me logo Genes that share expression patterns with BTBD9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BTBD9-AS1 Gene

Orthologs for BTBD9-AS1 Gene

Evolution for BTBD9-AS1 Gene

ENSEMBL:
Gene Tree for BTBD9-AS1 (if available)
TreeFam:
Gene Tree for BTBD9-AS1 (if available)

No data available for Orthologs for BTBD9-AS1 Gene

Paralogs for BTBD9-AS1 Gene

No data available for Paralogs for BTBD9-AS1 Gene

Variants for BTBD9-AS1 Gene

Sequence variations from dbSNP and Humsavar for BTBD9-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000132350 -- 38,479,822(+) CTCTC(A/G)GGCTC intron-variant, upstream-variant-2KB
rs1000233214 -- 38,484,528(+) GCTAA(A/G)GCTGT intron-variant, downstream-variant-500B
rs1000835943 -- 38,484,254(+) TGTTA(C/T)ATTTT intron-variant, downstream-variant-500B
rs1000844372 -- 38,484,163(+) TAGAC(A/G)TGCAC intron-variant, downstream-variant-500B
rs1002080614 -- 38,484,150(+) TGCTC(C/T)TCAAC intron-variant, downstream-variant-500B

Relevant External Links for BTBD9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BTBD9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BTBD9-AS1 Gene

Disorders for BTBD9-AS1 Gene

No disorders were found for BTBD9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BTBD9-AS1 Gene

Publications for BTBD9-AS1 Gene

No publications were found for BTBD9-AS1 Gene.

Products for BTBD9-AS1 Gene

Sources for BTBD9-AS1 Gene

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