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Aliases for BTBD8 Gene

Aliases for BTBD8 Gene

  • BTB Domain Containing 8 2 3 5
  • BTB (POZ) Domain Containing 8 2

External Ids for BTBD8 Gene

Previous GeneCards Identifiers for BTBD8 Gene

  • GC01P092018
  • GC01P092257
  • GC01P092318
  • GC01P092545
  • GC01P090666

Summaries for BTBD8 Gene

GeneCards Summary for BTBD8 Gene

BTBD8 (BTB Domain Containing 8) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BTBD8 Gene

Genomics for BTBD8 Gene

Regulatory Elements for BTBD8 Gene

Enhancers for BTBD8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F092482 0.9 FANTOM5 ENCODE 9.7 +404.6 404580 5.3 HDGF SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF143 ZNF207 SP3 SP5 FAM69A EVI5 CCDC18-AS1 SNORA66 SNORD21 BTBD8 GFI1 GC01P092471
GH01F092822 0.6 ENCODE 9.7 +742.8 742753 0.9 SOX13 TFAP4 PKNOX1 SAP130 ZNF384 CEBPG ZNF644 RARA TEAD3 PRDM10 BTBD8 FAM69A GC01M092816 RPL5
GH01F091545 1.3 FANTOM5 Ensembl ENCODE 9.7 -528.4 -528375 13.0 PKNOX1 ATF1 ZNF121 GATA2 FOS ZNF263 JUNB TBX21 ZNF585B SMARCA4 CDC7 BTBD8 WDR82P2 LOC102723436
GH01F092031 0.5 FANTOM5 5.3 -48.4 -48370 0.2 ZNF341 EPHX4 BTBD8 GC01P092039
GH01F092079 0.4 ENCODE 0.8 +0.3 300 1.6 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 GLIS2 ELK1 KLF7 KLF13 SNORD21 SNORA66 RPL5 KIAA1107 BTBD8 GAPDHP46
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BTBD8 on UCSC Golden Path with GeneCards custom track

Promoters for BTBD8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000165872 296 2000 ATF1 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 GLIS2

Genomic Location for BTBD8 Gene

Chromosome:
1
Start:
92,080,305 bp from pter
End:
92,184,725 bp from pter
Size:
104,421 bases
Orientation:
Plus strand

Genomic View for BTBD8 Gene

Genes around BTBD8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BTBD8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BTBD8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTBD8 Gene

Proteins for BTBD8 Gene

  • Protein details for BTBD8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5XKL5-BTBD8_HUMAN
    Recommended name:
    BTB/POZ domain-containing protein 8
    Protein Accession:
    Q5XKL5
    Secondary Accessions:
    • Q6V9S5

    Protein attributes for BTBD8 Gene

    Size:
    378 amino acids
    Molecular mass:
    42793 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BTBD8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BTBD8 Gene

Post-translational modifications for BTBD8 Gene

No Post-translational modifications

Other Protein References for BTBD8 Gene

No data available for DME Specific Peptides for BTBD8 Gene

Domains & Families for BTBD8 Gene

Gene Families for BTBD8 Gene

Protein Domains for BTBD8 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for BTBD8 Gene

Graphical View of Domain Structure for InterPro Entry

Q5XKL5

UniProtKB/Swiss-Prot:

BTBD8_HUMAN :
  • Contains 2 BTB (POZ) domains.
Domain:
  • Contains 2 BTB (POZ) domains.
genes like me logo Genes that share domains with BTBD8: view

Function for BTBD8 Gene

Gene Ontology (GO) - Molecular Function for BTBD8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000976 transcription regulatory region sequence-specific DNA binding IBA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
genes like me logo Genes that share ontologies with BTBD8: view

Phenotypes for BTBD8 Gene

genes like me logo Genes that share phenotypes with BTBD8: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BTBD8 Gene

Localization for BTBD8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BTBD8 Gene

Nucleus. Note=Localized to nucleus in fetal cells.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BTBD8 Gene COMPARTMENTS Subcellular localization image for BTBD8 gene
Compartment Confidence
nucleus 5
cytosol 3
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for BTBD8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IBA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with BTBD8: view

Pathways & Interactions for BTBD8 Gene

SuperPathways for BTBD8 Gene

No Data Available

Interacting Proteins for BTBD8 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000359404%0d%0a9606.ENSP00000288828%0d%0a9606.ENSP00000349722%0d%0a
Selected Interacting proteins: ENSP00000359404 Q5XKL5-BTBD8_HUMAN for BTBD8 Gene via STRING IID

Gene Ontology (GO) - Biological Process for BTBD8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006357 regulation of transcription from RNA polymerase II promoter IBA --
GO:0045893 positive regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with BTBD8: view

No data available for Pathways by source and SIGNOR curated interactions for BTBD8 Gene

Transcripts for BTBD8 Gene

mRNA/cDNA for BTBD8 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BTBD8 Gene

BTB (POZ) domain containing 8:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BTBD8 Gene

No ASD Table

Relevant External Links for BTBD8 Gene

GeneLoc Exon Structure for
BTBD8
ECgene alternative splicing isoforms for
BTBD8

Expression for BTBD8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BTBD8 Gene

Protein differential expression in normal tissues from HIPED for BTBD8 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for BTBD8 Gene



Protein tissue co-expression partners for BTBD8 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of BTBD8 Gene:

BTBD8

SOURCE GeneReport for Unigene cluster for BTBD8 Gene:

Hs.676102

mRNA Expression by UniProt/SwissProt for BTBD8 Gene:

Q5XKL5-BTBD8_HUMAN
Tissue specificity: Highly expressed in fetal brain. Weakly expressed in adult brain and prostate.
genes like me logo Genes that share expression patterns with BTBD8: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for BTBD8 Gene

Orthologs for BTBD8 Gene

This gene was present in the common ancestor of animals.

Orthologs for BTBD8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BTBD8 34 35
  • 99.91 (n)
cow
(Bos Taurus)
Mammalia BTBD8 34
  • 89.74 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia BTBD8 35
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Btbd8 34 16 35
  • 80.37 (n)
lizard
(Anolis carolinensis)
Reptilia BTBD8 35
  • 51 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG13917 35
  • 3 (a)
OneToOne
Species where no ortholog for BTBD8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for BTBD8 Gene

ENSEMBL:
Gene Tree for BTBD8 (if available)
TreeFam:
Gene Tree for BTBD8 (if available)

Paralogs for BTBD8 Gene

No data available for Paralogs for BTBD8 Gene

Variants for BTBD8 Gene

Sequence variations from dbSNP and Humsavar for BTBD8 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10606584 -- 92,139,659(+) TAGAC(-/TT)AAATT intron-variant
rs10631515 -- 92,144,810(+) CACAC(-/AC/ACAC)GTATA intron-variant
rs1077783 -- 92,087,156(-) CAGTG(C/T)TTTTT intron-variant
rs10783109 -- 92,132,001(+) CACCG(C/G)ACCCA intron-variant
rs10783112 -- 92,145,970(+) AGTGA(A/G)AATCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BTBD8 Gene

Variant ID Type Subtype PubMed ID
dgv365n54 CNV gain 21841781
esv2674499 CNV deletion 23128226
esv2714684 CNV deletion 23290073
esv2750842 CNV gain 17911159
esv2762159 CNV loss 21179565
esv3586804 CNV loss 21293372
esv3893834 CNV loss 25118596
nsv1002730 CNV gain 25217958
nsv1006318 CNV gain 25217958
nsv1009079 CNV gain 25217958
nsv1161036 CNV duplication 26073780
nsv441700 CNV loss 18776908
nsv462517 CNV gain 19166990
nsv524845 CNV gain 19592680
nsv546821 CNV gain 21841781
nsv823531 CNV gain 20364138
nsv946074 CNV duplication 23825009

Variation tolerance for BTBD8 Gene

Residual Variation Intolerance Score: 27.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.60; 45.06% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BTBD8 Gene

Human Gene Mutation Database (HGMD)
BTBD8
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BTBD8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BTBD8 Gene

Disorders for BTBD8 Gene

Relevant External Links for BTBD8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BTBD8

No disorders were found for BTBD8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BTBD8 Gene

Publications for BTBD8 Gene

  1. Molecular cloning and characterization of a novel human BTBD8 gene containing double BTB/POZ domains. (PMID: 14654994) Xu J. … Mao Y. (Int. J. Mol. Med. 2004) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  4. Network organization of the human autophagy system. (PMID: 20562859) Behrends C. … Harper J.W. (Nature 2010) 3 64
  5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3 64

Products for BTBD8 Gene

Sources for BTBD8 Gene

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