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Aliases for BTBD17 Gene

Aliases for BTBD17 Gene

  • BTB (POZ) Domain Containing 17 2 3
  • Transport And Golgi Organization 10 Homolog A (Drosophila) 2
  • BTB/POZ And BACK Domain-Containing Protein LOC388419 3
  • Transport And Golgi Organization 10 Homolog A 3
  • BTB/POZ Domain-Containing Protein 17 3
  • Galectin-3-Binding Protein-Like 4
  • LGALS3BPL 3
  • TANGO10A 3
  • BTBD17A 3

External Ids for BTBD17 Gene

Summaries for BTBD17 Gene

GeneCards Summary for BTBD17 Gene

BTBD17 (BTB (POZ) Domain Containing 17) is a Protein Coding gene. An important paralog of this gene is LGALS3BP.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BTBD17 Gene

Genomics for BTBD17 Gene

Genomic Location for BTBD17 Gene

Start:
74,356,416 bp from pter
End:
74,361,946 bp from pter
Size:
5,531 bases
Orientation:
Minus strand

Genomic View for BTBD17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BTBD17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BTBD17 Gene

Regulatory Elements for BTBD17 Gene

Proteins for BTBD17 Gene

  • Protein details for BTBD17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NE02-BTBDH_HUMAN
    Recommended name:
    BTB/POZ domain-containing protein 17
    Protein Accession:
    A6NE02
    Secondary Accessions:

    Protein attributes for BTBD17 Gene

    Size:
    478 amino acids
    Molecular mass:
    52471 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BTBD17 Gene

Proteomics data for BTBD17 Gene at MOPED

Post-translational modifications for BTBD17 Gene

  • Glycosylation at Asn61, Asn100, and Asn195

Other Protein References for BTBD17 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BTBD17 Gene

Domains for BTBD17 Gene

Gene Families for BTBD17 Gene

HGNC:
  • BTBD :BTB/POZ domain containing

Protein Domains for BTBD17 Gene

Suggested Antigen Peptide Sequences for BTBD17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NE02

UniProtKB/Swiss-Prot:

BTBDH_HUMAN
Domain:
  • Contains 1 BACK (BTB/Kelch associated) domain.:
    • A6NE02
  • Contains 1 BTB (POZ) domain.:
    • A6NE02
genes like me logo Genes that share domains with BTBD17: view

Function for BTBD17 Gene

Gene Ontology (GO) - Molecular Function for BTBD17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with BTBD17: view

miRNA for BTBD17 Gene

miRTarBase miRNAs that target BTBD17

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for BTBD17 Gene

Localization for BTBD17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BTBD17 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BTBD17 Gene COMPARTMENTS Subcellular localization image for BTBD17 gene
Compartment Confidence
plasma membrane 4
extracellular 3
mitochondrion 3
cytosol 2

Gene Ontology (GO) - Cellular Components for BTBD17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005737 colocalizes_with cytoplasm ISS --
GO:0005886 plasma membrane ISS --
genes like me logo Genes that share ontologies with BTBD17: view

Pathways for BTBD17 Gene

SuperPathways for BTBD17 Gene

No Data Available

Interacting Proteins for BTBD17 Gene

Gene Ontology (GO) - Biological Process for BTBD17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009615 response to virus ISS --
GO:0045071 negative regulation of viral genome replication ISS --
genes like me logo Genes that share ontologies with BTBD17: view

No data available for Pathways by source for BTBD17 Gene

Transcripts for BTBD17 Gene

mRNA/cDNA for BTBD17 Gene

Unigene Clusters for BTBD17 Gene

BTB (POZ) domain containing 17:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BTBD17 Gene

No ASD Table

Relevant External Links for BTBD17 Gene

GeneLoc Exon Structure for
BTBD17
ECgene alternative splicing isoforms for
BTBD17

Expression for BTBD17 Gene

mRNA expression in normal human tissues for BTBD17 Gene

mRNA differential expression in normal tissues according to GTEx for BTBD17 Gene

This gene is overexpressed in Brain - Cerebellum (5.3), Brain - Putamen (basal ganglia) (5.2), Brain - Amygdala (4.9), Brain - Hypothalamus (4.9), Brain - Nucleus accumbens (basal ganglia) (4.4), and Brain - Caudate (basal ganglia) (4.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for BTBD17 Gene

SOURCE GeneReport for Unigene cluster for BTBD17 Gene Hs.211870

genes like me logo Genes that share expressions with BTBD17: view

No data available for mRNA Expression by UniProt/SwissProt for BTBD17 Gene

Orthologs for BTBD17 Gene

This gene was present in the common ancestor of animals.

Orthologs for BTBD17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BTBD17 35
  • 99.02 (n)
  • 99.16 (a)
BTBD17 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BTBD17 35
  • 90.79 (n)
  • 93.1 (a)
BTBD17 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BTBD17 35
  • 91.98 (n)
  • 93.93 (a)
BTBD17 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Btbd17 35
  • 87.38 (n)
  • 92.68 (a)
Btbd17 16
Btbd17 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BTBD17 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BTBD17 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Btbd17 35
  • 87.31 (n)
  • 92.68 (a)
chicken
(Gallus gallus)
Aves BTBD17 35
  • 75.3 (n)
  • 68.95 (a)
BTBD17 36
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BTBD17 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia btbd17 35
  • 60.14 (n)
  • 58.91 (a)
Str.10709 35
zebrafish
(Danio rerio)
Actinopterygii btbd17a 36
  • 55 (a)
OneToMany
btbd17b 35
  • 63.88 (n)
  • 59.78 (a)
btbd17b 36
  • 53 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000791 35
  • 46.81 (n)
  • 28.57 (a)
fruit fly
(Drosophila melanogaster)
Insecta Tango10 35
  • 45.19 (n)
  • 29.56 (a)
Tango10 36
  • 21 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea W07A12.4 36
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 26 (a)
OneToMany
Species with no ortholog for BTBD17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BTBD17 Gene

ENSEMBL:
Gene Tree for BTBD17 (if available)
TreeFam:
Gene Tree for BTBD17 (if available)

Paralogs for BTBD17 Gene

Paralogs for BTBD17 Gene

genes like me logo Genes that share paralogs with BTBD17: view

Variants for BTBD17 Gene

Sequence variations from dbSNP and Humsavar for BTBD17 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs1061972 -- 74,358,750(+) CACTT(A/G)CCTCT intron-variant
rs3744152 -- 74,359,813(+) GTACA(A/G)TGGAA intron-variant
rs3760198 -- 74,358,899(+) GGTCA(A/G)TGGGC intron-variant
rs3760199 -- 74,359,117(+) CGGCA(A/G)GAGGC intron-variant
rs3874789 -- 74,362,966(+) CGCGC(A/G)TGTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BTBD17 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV Duplication 17116639
dgv372n27 CNV Gain 19166990
nsv517569 CNV Gain+Loss 19592680
esv2751770 CNV Gain 17911159
nsv509673 CNV Insertion 20534489
nsv833538 CNV Gain 17160897
nsv833539 CNV Loss 17160897
esv33995 CNV Loss 17666407
nsv908741 CNV Loss 21882294
nsv908742 CNV Loss 21882294

Relevant External Links for BTBD17 Gene

HapMap Linkage Disequilibrium report
BTBD17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BTBD17 Gene

Disorders for BTBD17 Gene

No disorders were found for BTBD17 Gene.

No data available for UniProtKB/Swiss-Prot for BTBD17 Gene

Publications for BTBD17 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4

Products for BTBD17 Gene

Sources for BTBD17 Gene

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