BTBD11 Gene
protein-coding GIFtS : 43
GCID: GC12 P107712
BTB (POZ) domain containing 11
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Aliasesfor BTBD11 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases BTB (POZ) Domain Containing 11 1 2 BTB/POZ Domain-Containing Protein 112 3 FLJ339571 ANK-Repeat BTB Domain Containing Protein2 Ankyrin Repeat And BTB/POZ Domain-Containing Protein BTBD112
Export aliases for BTBD11 gene to outside databases Previous GC identifers: GC12P106531 GC12P106216 GC12P106513 GC12P104772
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Summariesfor BTBD11 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor BTBD11 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_029419.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the BTBD11 gene promoter: GR HFH-3 GR-beta Pax-2 MyoD Pax-2a LCR-F1 FOXI1 AREB6 GR-alpha Other transcription factors Search SABiosciences Chromatin IP Primers for BTBD11 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BTBD11
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q23.3 Ensembl cytogenetic band: 12q23.3 HGNC cytogenetic band: 12q24.11 BTBD11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P107712: view genomic region
(about GC identifiers )
Start:
107,712,190 bp from pter
End:
108,053,419 bp from pter
Size:
341,230 bases
Orientation:
plus strand
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Proteinsfor BTBD11 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: BTBDB_HUMAN, A6QL63 (See
protein sequence )Recommended Name: Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 Size : 1104 amino acids; 120884 Da
Subcellular location : Membrane; Single-pass membrane protein (Potential)
Sequence caution : Sequence=AAI01562.1; Type=Erroneous initiation; Sequence=AAI01564.1; Type=Erroneous initiation;Sequence=AAI46825.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAR21078.1; Type=Erroneous initiation; Sequence=BAC85963.1; Type=Erroneous initiation; Sequence=EAW97799.1; Type=Erroneous gene model prediction;
Secondary accessions : A4FU41 B3KXG3 C9J019 C9JK80 E9PHS4 Q3ZTQ4 Q52M89 Q6ZV99 Q8N245Alternative splicing : 5 isoforms : A6QL63-1 A6QL63-2 A6QL63-3 A6QL63-4 A6QL63-5 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for BTBD11: NX_A6QL63 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_A6QL63 BTBD11 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001017523.1 NP_001018082.1 ENSEMBL proteins: ENSP00000280758 ENSP00000413889 ENSP00000447319 ENSP00000447606 ENSP00000407416 ENSP00000349690 ENSP00000448322 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016021 integral to membrane
IEA --
BTBD11 for ontologies About GeneDecksing BTBD11 Antibody Products: Assay Products for BTBD11:
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Protein
Domains / Familiesfor BTBD11 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
BTBD11 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry A6QL63 ProtoNet protein and cluster: A6QL63
UniProtKB/Swiss-Prot: BTBDB_HUMAN, A6QL63 Similarity : Contains 5 ANK repeatsSimilarity : Contains 1 BTB (POZ) domain
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Functionfor BTBD11 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: BTBDB_HUMAN, A6QL63 Induction : By all-trans retinoic acid (ATRA)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BTBD11 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BTBD11 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BTBD11 (NM_014867 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BTBD11 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat BTBD11
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTBD11
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
-- -- GO:0046982 protein heterodimerization activity
IEA --
BTBD11 for ontologies About GeneDecksing 3 GenomeRNAi human phenotypes for BTBD11 :
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Pathways & Interactionsfor BTBD11 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BTBD11 2 Interacting proteins for BTBD11 (A6QL63 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table
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Drugs & Compoundsfor BTBD11 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for BTBD11 Search CenterWatch for drugs/clinical trials and news about BTBD11 / BTBDB
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Transcriptsfor BTBD11 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for BTBD11 gene (3 alternative transcripts): NM_152322.2 NM_001017523.1 NM_001018072.1 Unigene Cluster for BTBD11:
BTB (POZ) domain containing 11 Hs.271272 [show with all ESTs ] Unigene Representative Sequence: NM_001018072 7 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000280758 (uc009zut.1 uc001tmk.1 ) ENST00000420571 ENST00000490090 (uc001tmj.3 )ENST00000550706 ENST00000415943 ENST00000357167 (uc001tml.1 uc001tmm.1 )ENST00000494235 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BTBD11 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BTBD11 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BTBD11 (NM_014867 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BTBD11 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat BTBD11
Additional cDNA sequence: AK091276.1 AK094304.1 AK122818.1 AK124835.1 AK127012.1 AK127295.1 AK128445.1 AY373588.1 BC027931.1 BC093627.1 BC093629.1 BC101561.1 BC101563.1 BC146824.1
6 DOTS entries : DT.100642931 DT.100020173
DT.95299794 DT.91722833 DT.121151225 DT.65284116 24/56 AceView cDNA sequences (see all 56 ):
AI565114 BX105006 AA860501 AK127295 AA883254 CB046343 T32438 AL040936 AW583242 AK128445 AL040935 AK122818 AA722861 BU500973 BI493600 AK127012 BE379926 AA868239 CK904990 AK094304 AA782574 BE794809 AI084364 W15573 GeneLoc Exon Structure
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Expression for BTBD11 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section BTBD11 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATCATTTGCA
About this image BTBD11 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See BTBD11 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for BTBD11 SOURCE GeneReport for Unigene cluster: Hs.271272 SABiosciences Custom PCR Arrays for BTBD11 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BTBD11Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat BTBD11 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BTBD11 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BTBD11 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BTBD11
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Orthologsfor BTBD11 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for BTBD11 gene from 8/18 species (see all 18 ) About this table
ENSEMBL Gene Tree for BTBD11 (if available)TreeFam Gene Tree for BTBD11 (if available)
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Paralogsfor BTBD11 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for BTBD11 gene ABTB2 2 1 SIMAP similar gene for BTBD11 using alignment to 3 protein entries: BTBDB_HUMAN (see all proteins ):ABTB2
BTBD11 for paralogs About GeneDecksing
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Genomic Variantsfor BTBD11 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for BTBD11 (107712190 - 107962190 bp, first 250kb of BTBD11)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for BTBD11 2 Indels : 24849 11061
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing BTBD11
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Disorders
/ Diseasesfor BTBD11 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section BTBD11 for disorders About MalaCards
BTBD11 for disorders About GeneDecksing Human Genome Epidemiology (HuGE) Navigator: BTBD11 (4 documents) Export disorders for BTBD11 gene to outside databases
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Publicationsfor BTBD11 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for BTBD11 gene integrated from 9 sources : (articles sorted by number of sources associating them with BTBD11) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086) 1 Bailey S.D....Anand S. (2010) Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121) 1 Talmud P.J.... . (2009) A genome-wide study of common SNPs and CNVs in cognit ive performance in the CANTAB. (PubMed id 19734545) 1 Need A.C....Goldstein D.B. (2009) The finished DNA sequence of human chromosome 12. (PubMed id 16541075) 2 Scherer S.E.... Gibbs R.A. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for BTBD11 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing BTBD11 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing BTBD11 gene
(According to HUGE )
About This Section --
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Specialized Databases showing BTBD11 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for BTBD11 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for BTBD11 gene: Search GeneIP for patents involving BTBD11 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor BTBD11 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for BTBD11 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for BTBD11 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BTBD11 OriGene Protein Over-expression Lysate for BTBD11 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for BTBD11 OriGene 3'-UTR Clone for BTBD11 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BTBD11 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BTBD11 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for BTBD11 OriGene Custom Protein Services for BTBD11 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat BTBD11 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing BTBD11 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BTBD11 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat BTBD11 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BTBD11 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BTBD11
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