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BST2 Gene

protein-coding GIFtS: 51

GC19M017374

bone marrow stromal cell antigen 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
BST-2 ^³
CD317 ^¹, ²
Tetherin ^³
tetherin ^²

Descriptions
CD317 antigen ^³
HM1.24 antigen ^³
bone marrow stromal cell antigen 2 ^²

External Ids
HGNC: 1119¹
Entrez Gene: 684²
UniProtKB: Q10589³
Ensembl: ENSG00000130303⁷

Search outside databases for aliases for BST2 gene

Previous GC identifers: GC19M018007 GC19M017906 GC19M017358

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for BST2:

Bone marrow stromal cells are involved in the growth and development of B-cells. The specific

function of the protein encoded by the bone marrow stromal cell antigen 2 is undetermined;

however, this protein may play a role in pre-B-cell growth and in rheumatoid arthritis. [provided

by RefSeq]

UniProtKB/Swiss-Prot: BST2_HUMAN, Q10589

Function: May be involved in the sorting of secreted proteins (By similarity). May be involved in

pre-B-cell growth. Antiretroviral defense protein, that blocks release of retrovirus from the cell

surface. Depleted unpon HIV-1 infection by viral VPU protein through 20S proteasome degradation

Gene Wiki entry for BST2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the BST2 gene

Entrez Gene cytogenetic band: 19p13.2 Ensembl cytogenetic band: 19p13.11 HGNC cytogenetic band: 19p13.2

BST2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure

GeneLoc location for GC19M017374: (about GC identifiers)

Start:	17,374,750 bp from pter
End:	17,377,401 bp from pter
Size:	2,652 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000019.8 NT_011295.10

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: BST2_HUMAN, Q10589 (See protein sequence)

Recommended Name: Bone marrow stromal antigen 2 precursor

Size: 180 amino acids; 19769 Da

Subunit: Homodimer (Probable)

Subcellular location: Golgi apparatus, trans-Golgi network (By similarity). Cell membrane;

Single-pass type II membrane protein. Cell membrane; Lipid-anchor, GPI-anchor

Secondary accessions: Q53G07

REFSEQ proteins: NP_004326.1

ENSEMBL proteins:

ENSP00000252593

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (BST2)
	Human Recombinant Proteins from Abnova (BST2)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005794	Golgi apparatus	IEA	--
GO:0005886	plasma membrane	IEA	--
GO:0005887	integral to plasma membrane	TAS	7607676
GO:0031225	anchored to membrane	IEA	--

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Antibodies for BST2:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for BST2
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (BST2), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (BST2)
	Novus Biologicals Antibodies for BST2

Assays for BST2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q10589

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (BST2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (BST2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004335

Applied Biosystems Silencer® siRNAs for BST2

Sigma-Aldrich siRNA for BST2

Sigma-Aldrich shRNA Panels and shRNA for BST2

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for BST2
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_004335
Myc/DDK tagged cDNA clone in CMV expression vector: NM_004335
untagged cDNA clone in CMV expression vector: NM_004335

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_004335

UniProtKB/Swiss-Prot: BST2_HUMAN, Q10589

Function: May be involved in the sorting of secreted proteins (By similarity). May be involved in

pre-B-cell growth. Antiretroviral defense protein, that blocks release of retrovirus from the cell

surface. Depleted unpon HIV-1 infection by viral VPU protein through 20S proteasome degradation

Induction: During B-cell activation (at protein level), or by interferon alpha as part of entiviral

state cellular program

Genatlas biochemistry entry for BST2:

bone marrow stromal antigen 2,involved in pre-B-cell growth,36kDa,expressed in various tissues

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004871	signal transducer activity	IMP	12761501

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

5/8 Interacting proteins for BST2 (ENSP00000252593³) via UniProtKB, MINT, and/or STRING (see all 8 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
STAT3	ENSP00000264657³	STRING (score=.855)
BST1	ENSP00000371783³	STRING (score=.842)
IFNA17	ENSP00000369562³	STRING (score=.814)
IFNA5	ENSP00000369560³	STRING (score=.814)
--	ENSP00000369552³	STRING (score=.818)
--	ENSP00000335118³	STRING (score=.814)
--	ENSP00000321956³	STRING (score=.814)
--	ENSP00000276919³	STRING (score=.814)

About this table

5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6 ):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006959	humoral immune response	TAS	7607676
GO:0007267	cell-cell signaling	TAS	7607676
GO:0007275	multicellular organismal development	TAS	7607676
GO:0008283	cell proliferation	TAS	7607676
GO:0042113	B cell activation	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for BST2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (BST2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (BST2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004335

Sigma-Aldrich siRNA for BST2

Sigma-Aldrich shRNA Panels and shRNA for BST2

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_004335

REFSEQ mRNAs for BST2 gene:

NM_004335.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_004335

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004335
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004335
                                 untagged cDNA clone in CMV expression vector: NM_004335

Additional cDNA sequence:

AK223124.1 AK291099.1 AK303593.1 AY320400.1 AY320402.1 BC033873.1 CR591045.1 CR609450.1

D28137.1

9 DOTS entries:

DT.75161707 DT.101973854 DT.97819337 DT.91757455 DT.100796120 DT.102829816 DT.91757448 DT.95150545

DT.95370619

24/399 AceView cDNA sequences (see all 399 ):

CB999904 AI914688 BU854816 BU184531 BU168554 AA485528 BI819227 BQ957470

BM562301 BE275026 BX481937 BQ053580 BQ230530 AA485371 BQ430313 BI115017

AA349268 BQ058341 BF203853 BM784895 BG745305 CD246551 BF971297 BI223714

highest scoring ESTs for BST2:

D28137 AA349222 AA349268 AI859425 AL547314 AU126209 AV747117 AW063904 AW084960 AW173742

Unigene Cluster for BST2:

Bone marrow stromal cell antigen 2

Hs.118110 [show with all ESTs]

Unigene Representative Sequence: BQ679629

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000252593

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

BST2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for BST2

¹ / ² / ³

3 probe-sets matching BST2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
39061_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	D28137	1.00	1.00	1.00	1
201641_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_004335	0.60	1.00	0.82	1
201641_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks BST2 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TGCTGCCTGT

SOURCE GeneReport for Unigene cluster: Hs.118110
Expression variation in blood from EXPOLDB for BST2
UniProtKB/Swiss-Prot: BST2_HUMAN, Q10589
Tissue specificity: Predominantly expressed in liver, lung, heart and placenta. Lower levels in
pancreas, kidney, skeletal muscle and brain. Overexpressed in multiple myeloma cells. Highly
expressed during B-cell development, from pro-B precursors to plasma cells. Highy expressed on
T-cells, monocytes, NK cells and dendritic cells (at protein level)

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for BST2 gene from 5 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	BST2¹	--	bone marrow stromal cell antigen 2	60.89(n) 46.82(a)	609654 XM_860510.1 XP_865603.1
chimpanzee (Pan troglodytes)	BST2¹	--	bone marrow stromal cell antigen 2	98.15(n) 97.22(a)	455837 XM_512491.2 XP_512491.2
cow (Bos taurus)	BST2¹	--	bone marrow stromal cell antigen 2	66.44(n) 48.97(a)	618737 XM_871059.2 XP_876152.2
rat (Rattus norvegicus)	Bst2¹	--	bone marrow stromal cell antigen 2	56.3(n) 42.22(a)	378947 NM_198134.1 NP_937767.1
mouse (Mus musculus)	Bst2^{1, 5}	8⁵	bone marrow stromal cell antigen 2^{1, 5}	58.27(n)¹ 46.67(a)¹	69550¹ NM_198095.2¹ NP_932763.1¹ AK009361⁵ AK154399⁵ (see all 11)

About this table Species with no ortholog for BST2

ENSEMBL Gene Tree for BST2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 600534

UniProtKB/Swiss-Prot: BST2_HUMAN, Q10589

May play a role in B-cell activation in rheumatoid arthritis (RA)

1 PharmGKB disease relationship for BST2 gene

Disease	PharmGKB Relations	PubMed IDs for articles supporting these relationships
Leukemia, Lymphocytic, Acute, L1	FA GN	12086872

About this table

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/21 PubMed articles for BST2 gene (see all 21 ):

Molecular cloning and chromosomal mapping of a bone marrow stromal cell surface gene, BST2, that may be involved in pre-B-cell growth. (PubMed id 7607676)^{1, 2, 3, 4} Ishikawa J.... Hirano T. (1995)
Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu. (PubMed id 18200009)^{3, 4} Neil S.J....Bieniasz P.D. (2008)
Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol- anchored proteins released upon phospholipase D treatment. (PubMed id 16602701)^{3, 4} Elortza F.... Jensen O.N. (2006)
Characterization of antibodies submitted to the B cell section of the 8th Human Leukocyte Differentiation Antigens Workshop by flow cytometry and immunohistochemistry. (PubMed id 16157322)^{3, 4} Vidal-Laliena M....Engel P. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Molecular cloning and characterization of a surface antigen preferentially overexpressed on multiple myeloma cells. (PubMed id 10329429)^{3, 4} Ohtomo T.... Tsuchiya M. (1999)
Interferon-alpha enhances CD317 expression and the antitumor activity of anti-CD317 monoclonal antibody in renal cell carcinoma xenograft models. (PubMed id 19032371)^{1, 3} Kawai S....Yamada-Okabe H. (2008)
Inhibition of Lassa and Marburg virus production by tetherin. (PubMed id 19091864)³ Sakuma T....Yasuda J. (2009)
HIV-1 antagonism of CD317 is species specific and involves Vpu-mediated proteasomal degradation of the restriction factor. (PubMed id 19286137)³ Goffinet C....Keppler O.T. (2009)
Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218)⁴ Chen R.... Zou H. (2009)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 684	HGNC: 1119	AceView: BST2	Ensembl:ENSG00000130303	euGenes: HUgn684
ECgene: BST2	H-InvDB: BST2

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for BST2
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for BST2:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for BST2-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for BST2		Antibodies for BST2
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for BST2		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

	Recombinant Proteins (BST2)
	Antibodies (BST2)
	Chimera RNAi (BST2)
	Custom Service for Mouse Mab
	Custom Service for Rabbit Pab from Full-length Protein

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Search Tocris compounds for BST2

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Antibodies for BST2

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BST2 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for BST2

Summaries
for BST2

Genomic Location
for BST2

Proteins
for BST2

Protein Domains/
Families
for BST2

Gene Function
for BST2

Pathways & Interactions
for BST2

Drugs & Compounds
for BST2

Transcripts
for BST2

Expression
for BST2

Orthologs
for BST2

Paralogs
for BST2

SNPs/Variants
for BST2

Disorders & Mutations
for BST2

Medical News
for BST2

Publications
for BST2

Search for BST2

Genome Databases showing BST2

Other Databases showing BST2

Specialized Databases showing BST2

Licensable Technologies
for BST2

Services
for BST2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

BST2 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor BST2

Summariesfor BST2

Genomic Locationfor BST2

Proteinsfor BST2

Protein Domains/Familiesfor BST2

Gene Functionfor BST2

Pathways & Interactionsfor BST2

Drugs & Compoundsfor BST2

Transcriptsfor BST2

Expression for BST2

Orthologsfor BST2

Paralogsfor BST2

SNPs/Variantsfor BST2

Disorders & Mutationsfor BST2

Medical Newsfor BST2

Publicationsfor BST2

Search for BST2

Genome Databases showing BST2

Other Databases showing BST2

Specialized Databases showing BST2

Licensable Technologiesfor BST2

Servicesfor BST2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for BST2

Summaries
for BST2

Genomic Location
for BST2

Proteins
for BST2

Protein Domains/
Families
for BST2

Gene Function
for BST2

Pathways & Interactions
for BST2

Drugs & Compounds
for BST2

Transcripts
for BST2

Expression
for BST2

Orthologs
for BST2

Paralogs
for BST2

SNPs/Variants
for BST2

Disorders & Mutations
for BST2

Medical News
for BST2

Publications
for BST2

Licensable Technologies
for BST2

Services
for BST2