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Aliases for BSND Gene

Aliases for BSND Gene

  • Barttin CLCNK-Type Chloride Channel Accessory Beta Subunit 2 3
  • Bartter Syndrome, Infantile, With Sensorineural Deafness (Barttin) 2 3
  • Deafness, Autosomal Recessive 73 2 3
  • BART 3 4
  • Barttin 3
  • DFNB73 3

External Ids for BSND Gene

Previous HGNC Symbols for BSND Gene

  • DFNB73

Previous GeneCards Identifiers for BSND Gene

  • GC01P055301
  • GC01P054365
  • GC01P054822
  • GC01P054834
  • GC01P055176
  • GC01P055237
  • GC01P055464
  • GC01P053578

Summaries for BSND Gene

Entrez Gene Summary for BSND Gene

  • This gene encodes an essential beta subunit for CLC chloride channels. These heteromeric channels localize to basolateral membranes of renal tubules and of potassium-secreting epithelia of the inner ear. Mutations in this gene have been associated with Bartter syndrome with sensorineural deafness. [provided by RefSeq, Jul 2008]

GeneCards Summary for BSND Gene

BSND (Barttin CLCNK-Type Chloride Channel Accessory Beta Subunit) is a Protein Coding gene. Diseases associated with BSND include bartter syndrome, type 4a and bartter syndrome type 4. Among its related pathways are Diuretics Pathway, Pharmacodynamics and Ion channel transport. GO annotations related to this gene include chloride channel activity and chloride channel regulator activity.

UniProtKB/Swiss-Prot for BSND Gene

  • Functions as a beta-subunit for CLCNKA and CLCNKB chloride channels. In the kidney CLCNK/BSND heteromers mediate chloride reabsorption by facilitating its basolateral efflux. In the stria, CLCNK/BSND channels drive potassium secretion by recycling chloride for the basolateral SLC12A2 cotransporter.

Gene Wiki entry for BSND Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BSND Gene

Genomics for BSND Gene

Regulatory Elements for BSND Gene

Genomic Location for BSND Gene

Start:
54,998,933 bp from pter
End:
55,010,883 bp from pter
Size:
11,951 bases
Orientation:
Plus strand

Genomic View for BSND Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BSND Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BSND Gene

Proteins for BSND Gene

  • Protein details for BSND Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WZ55-BSND_HUMAN
    Recommended name:
    Barttin
    Protein Accession:
    Q8WZ55
    Secondary Accessions:
    • Q6NT28

    Protein attributes for BSND Gene

    Size:
    320 amino acids
    Molecular mass:
    35197 Da
    Quaternary structure:
    • Interacts with CLCNK channels. Forms heteromers with CLCNKA in the thin ascending limb of Henle and with CLCNKB in the thick ascending limb and more distal segments (By similarity).
    SequenceCaution:
    • Sequence=BC069510; Type=Frameshift; Positions=Several; Evidence={ECO:0000305};

neXtProt entry for BSND Gene

Proteomics data for BSND Gene at MOPED

Post-translational modifications for BSND Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BSND Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for BSND Gene

Domains for BSND Gene

Protein Domains for BSND Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BSND Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BSND: view

No data available for Gene Families and UniProtKB/Swiss-Prot for BSND Gene

Function for BSND Gene

Molecular function for BSND Gene

UniProtKB/Swiss-Prot Function:
Functions as a beta-subunit for CLCNKA and CLCNKB chloride channels. In the kidney CLCNK/BSND heteromers mediate chloride reabsorption by facilitating its basolateral efflux. In the stria, CLCNK/BSND channels drive potassium secretion by recycling chloride for the basolateral SLC12A2 cotransporter.

Gene Ontology (GO) - Molecular Function for BSND Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005254 contributes_to chloride channel activity ISS --
GO:0005515 protein binding --
GO:0017081 chloride channel regulator activity IEA --
genes like me logo Genes that share ontologies with BSND: view
genes like me logo Genes that share phenotypes with BSND: view

Animal Models for BSND Gene

MGI Knock Outs for BSND:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BSND

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for BSND Gene

Localization for BSND Gene

Subcellular locations from UniProtKB/Swiss-Prot for BSND Gene

Cell membrane; Multi-pass membrane protein. Cytoplasm. Note=A significant amount also observed intracellularly. Staining in membranes of the renal tubule and of potassium-secreting epithelia of the inner ear is basolateral (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BSND Gene COMPARTMENTS Subcellular localization image for BSND gene
Compartment Confidence
plasma membrane 5
extracellular 3
endoplasmic reticulum 1
golgi apparatus 1
lysosome 1

Gene Ontology (GO) - Cellular Components for BSND Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane ISS --
GO:0016323 basolateral plasma membrane ISS --
GO:0043234 protein complex ISS --
genes like me logo Genes that share ontologies with BSND: view

Pathways for BSND Gene

genes like me logo Genes that share pathways with BSND: view

Pathways by source for BSND Gene

Interacting Proteins for BSND Gene

Gene Ontology (GO) - Biological Process for BSND Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006821 chloride transport --
GO:0034220 ion transmembrane transport TAS --
GO:0055085 transmembrane transport TAS --
GO:1902476 chloride transmembrane transport IEA --
genes like me logo Genes that share ontologies with BSND: view

Compounds for BSND Gene

(1) HMDB Compounds for BSND Gene

Compound Synonyms Cas Number PubMed IDs
Chlorine
  • Cl2
16887-00-6

(6) Novoseek inferred chemical compound relationships for BSND Gene

Compound -log(P) Hits PubMed IDs
chloride 77.3 20
nacl 49.2 3
potassium 47.7 7
furosemide 43.2 1
sodium 8.96 1
genes like me logo Genes that share compounds with BSND: view

Transcripts for BSND Gene

mRNA/cDNA for BSND Gene

(5) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BSND Gene

Bartter syndrome, infantile, with sensorineural deafness (Barttin):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BSND

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BSND Gene

No ASD Table

Relevant External Links for BSND Gene

GeneLoc Exon Structure for
BSND
ECgene alternative splicing isoforms for
BSND

Expression for BSND Gene

mRNA expression in normal human tissues for BSND Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BSND Gene

This gene is overexpressed in Kidney - Cortex (35.5).

Protein differential expression in normal tissues for BSND Gene

This gene is overexpressed in Kidney (69.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for BSND Gene

SOURCE GeneReport for Unigene cluster for BSND Gene Hs.151291

mRNA Expression by UniProt/SwissProt for BSND Gene

Q8WZ55-BSND_HUMAN
Tissue specificity: Expressed primarily in kidney. Expressed in specific nephron segments and in the stria vascularis of the inner ear.
genes like me logo Genes that share expressions with BSND: view

Expression partners for BSND Gene

In Situ Assay Products

Orthologs for BSND Gene

This gene was present in the common ancestor of chordates.

Orthologs for BSND Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BSND 35
  • 82.12 (n)
  • 75.71 (a)
BSND 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BSND 35
  • 83.02 (n)
  • 77.19 (a)
BSND 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bsnd 35
  • 77.02 (n)
  • 74.18 (a)
Bsnd 16
Bsnd 36
  • 72 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia BSND 35
  • 99.06 (n)
  • 97.89 (a)
BSND 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bsnd 35
  • 75.79 (n)
  • 73.94 (a)
oppossum
(Monodelphis domestica)
Mammalia BSND 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BSND 36
  • 28 (a)
OneToOne
chicken
(Gallus gallus)
Aves BSND 36
  • 38 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BSND 36
  • 30 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bsnd 35
  • 44.78 (n)
  • 33.33 (a)
zebrafish
(Danio rerio)
Actinopterygii bsnd 36
  • 27 (a)
OneToOne
Species with no ortholog for BSND:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BSND Gene

ENSEMBL:
Gene Tree for BSND (if available)
TreeFam:
Gene Tree for BSND (if available)

Paralogs for BSND Gene

Pseudogenes.org Pseudogenes for BSND Gene

genes like me logo Genes that share paralogs with BSND: view

No data available for Paralogs for BSND Gene

Variants for BSND Gene

Sequence variations from dbSNP and Humsavar for BSND Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs759914 -- 54,999,921(+) TGGTG(G/T)CATGC intron-variant, upstream-variant-2KB
rs759915 -- 55,000,124(+) CACAG(A/G)GTCAT intron-variant, upstream-variant-2KB
rs1003767 -- 54,998,647(-) CATGT(A/G)CCTAT upstream-variant-2KB
rs1003768 -- 54,998,441(-) tggga(C/T)gtgaa upstream-variant-2KB
rs1003769 -- 54,998,187(-) ATTCA(C/T)ACGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BSND Gene

Variant ID Type Subtype PubMed ID
nsv817614 CNV Gain 22305530
esv2431579 CNV Insertion 19546169

Relevant External Links for BSND Gene

HapMap Linkage Disequilibrium report
BSND
Human Gene Mutation Database (HGMD)
BSND

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BSND Gene

Disorders for BSND Gene

(1) OMIM Diseases for BSND Gene (606412)

UniProtKB/Swiss-Prot

BSND_HUMAN
  • Bartter syndrome 4A (BS4A) [MIM:602522]: An autosomal recessive disorder characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. Bartter syndrome type 4 is associated with sensorineural deafness. {ECO:0000269 PubMed:11687798, ECO:0000269 PubMed:12574213}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(9) Novoseek inferred disease relationships for BSND Gene

Disease -log(P) Hits PubMed IDs
bartters syndrome 96.1 27
deafness sensorineural 89.1 11
gitelman syndrome 84.5 1
congenital deafness 79.5 2
hypercalciuria 75.1 1

Relevant External Links for BSND

Genetic Association Database (GAD)
BSND
Human Genome Epidemiology (HuGE) Navigator
BSND
genes like me logo Genes that share disorders with BSND: view

No data available for Genatlas for BSND Gene

Publications for BSND Gene

  1. Mutation of BSND causes Bartter syndrome with sensorineural deafness and kidney failure. (PMID: 11687798) Birkenhaeger R. … Hildebrandt F. (Nat. Genet. 2001) 2 3 4 23
  2. Barttin is a Cl- channel beta-subunit crucial for renal Cl- reabsorption and inner ear K+ secretion. (PMID: 11734858) Estevez R. … Jentsch T.J. (Nature 2001) 2 3 4 23
  3. Atypical Bartter syndrome with sensorineural deafness with G47R mutation of the beta-subunit for ClC-Ka and ClC-Kb chloride channels, barttin. (PMID: 12574213) Miyamura N. … Araki E. (J. Clin. Endocrinol. Metab. 2003) 3 4 23
  4. Molecular mechanisms of Bartter syndrome caused by mutations in the BSND gene. (PMID: 12761627) Hayama A. … Uchida S. (Histochem. Cell Biol. 2003) 3 4 23
  5. Common genetic variants and haplotypes in renal CLCNKA gene are associated to salt-sensitive hypertension. (PMID: 17510212) Barlassina C. … Cusi D. (Hum. Mol. Genet. 2007) 3 23 48

Products for BSND Gene

Sources for BSND Gene

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