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Aliases for BSN-AS2 Gene

Subcategory (RNA class) for BSN-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BSN-AS2 Gene

  • BSN Antisense RNA 2 (Head To Head) 2 3 5
  • BSN Antisense RNA 2 (Non-Protein Coding) 2

External Ids for BSN-AS2 Gene

Summaries for BSN-AS2 Gene

GeneCards Summary for BSN-AS2 Gene

BSN-AS2 (BSN Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BSN-AS2 Gene

Genomics for BSN-AS2 Gene

Regulatory Elements for BSN-AS2 Gene

Enhancers for BSN-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F049665 1.2 Ensembl ENCODE 11.4 -111.9 -111895 1.3 ELF3 HDGF MLX SREBF2 ARID4B THRB RAD21 RARA ZNF143 CREM BSN-AS1 BSN BSN-AS2 CDHR4 AMT PIR32155 APEH
GH03F049670 1.2 Ensembl ENCODE 10.8 -117.2 -117155 1.8 ELF3 ZFP64 ARID4B DMAP1 THRB ZSCAN9 RAD21 RARA RFX5 YY1 AMT BSN-AS1 BSN BSN-AS2 CDHR4 UBA7 MST1 APEH PIR32155
GH03F049668 1.2 Ensembl ENCODE 10.8 -114.6 -114563 1.1 ELF3 ARID4B DMAP1 THRB ZNF48 ZSCAN9 RAD21 RARA FOS CREM BSN-AS1 BSN BSN-AS2 CDHR4 GMPPB AMT APEH PIR32155
GH03F049587 1.1 Ensembl ENCODE 11.6 -33.4 -33435 0.8 DRAP1 TBP IRF2 PKNOX1 ATF1 SAP130 ARID4B CEBPG POLR2A NFYB BSN BSN-AS2 BSN-AS1
GH03F049484 1.2 Ensembl ENCODE 10.4 +69.1 69130 1.9 MLX ZFP64 ARID4B THRB ZNF48 RARA CREM THAP11 HMG20B ZNF680 AMT QRICH1 LOC105377080 ENSG00000230454 CCDC71 RHOA-IT1 TMEM89 WDR6 TMEM115 SEMA3F-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BSN-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for BSN-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001847730 -34 1201 HDGF ATF1 MLX ARID4B SIN3A YBX1 DMAP1 ZNF143 MXD4 MIER2

Genomic Location for BSN-AS2 Gene

Chromosome:
3
Start:
49,549,306 bp from pter
End:
49,554,366 bp from pter
Size:
5,061 bases
Orientation:
Minus strand

Genomic View for BSN-AS2 Gene

Genes around BSN-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BSN-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BSN-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BSN-AS2 Gene

Proteins for BSN-AS2 Gene

Post-translational modifications for BSN-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BSN-AS2 Gene

Domains & Families for BSN-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BSN-AS2 Gene

Function for BSN-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BSN-AS2 Gene

Localization for BSN-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BSN-AS2 Gene

Pathways & Interactions for BSN-AS2 Gene

SuperPathways for BSN-AS2 Gene

No Data Available

Interacting Proteins for BSN-AS2 Gene

Gene Ontology (GO) - Biological Process for BSN-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BSN-AS2 Gene

Transcripts for BSN-AS2 Gene

mRNA/cDNA for BSN-AS2 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BSN-AS2 Gene

BSN antisense RNA 2 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BSN-AS2 Gene

No ASD Table

Relevant External Links for BSN-AS2 Gene

GeneLoc Exon Structure for
BSN-AS2
ECgene alternative splicing isoforms for
BSN-AS2

Expression for BSN-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BSN-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for BSN-AS2 Gene

This gene is overexpressed in Testis (x17.6).

SOURCE GeneReport for Unigene cluster for BSN-AS2 Gene:

Hs.435651
genes like me logo Genes that share expression patterns with BSN-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BSN-AS2 Gene

Orthologs for BSN-AS2 Gene

Evolution for BSN-AS2 Gene

ENSEMBL:
Gene Tree for BSN-AS2 (if available)
TreeFam:
Gene Tree for BSN-AS2 (if available)

No data available for Orthologs for BSN-AS2 Gene

Paralogs for BSN-AS2 Gene

No data available for Paralogs for BSN-AS2 Gene

Variants for BSN-AS2 Gene

Sequence variations from dbSNP and Humsavar for BSN-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs112108559 -- 49,550,379(+) TCCCA(A/G)AGAAG nc-transcript-variant
rs113406477 -- 49,553,231(+) GTTTA(A/G)CGTGA intron-variant, upstream-variant-2KB
rs114465719 -- 49,550,015(+) TTTAC(C/T)GCCTT nc-transcript-variant
rs115541747 -- 49,550,705(+) CCATG(A/C)TGAAA nc-transcript-variant
rs115713947 -- 49,554,106(+) CCATT(A/C)TCGGG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BSN-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv834687 CNV loss 17160897
esv3369484 CNV duplication 20981092

Relevant External Links for BSN-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BSN-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BSN-AS2 Gene

Disorders for BSN-AS2 Gene

Relevant External Links for BSN-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BSN-AS2

No disorders were found for BSN-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BSN-AS2 Gene

Publications for BSN-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for BSN-AS2 Gene

Sources for BSN-AS2 Gene

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