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Aliases for BSN-AS2 Gene

Subcategory (RNA class) for BSN-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BSN-AS2 Gene

  • BSN Antisense RNA 2 (Head To Head) 2 3 5
  • BSN Antisense RNA 2 (Non-Protein Coding) 2

External Ids for BSN-AS2 Gene

Summaries for BSN-AS2 Gene

GeneCards Summary for BSN-AS2 Gene

BSN-AS2 (BSN Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BSN-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BSN-AS2 Gene

Genomics for BSN-AS2 Gene

GeneHancer (GH) Regulatory Elements for BSN-AS2 Gene

Promoters and enhancers for BSN-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I049553 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.2 230 1.7 HDGF PKNOX1 ATF1 MLX ARNT ARID4B SIN3A DMAP1 YBX1 ZNF143 BSN BSN-AS2 APEH PIR41851 GC03P049421
GH03I049484 Enhancer 1.3 Ensembl ENCODE dbSUPER 20.7 +69.1 69130 1.9 FOXA2 MLX ZFP64 ARID4B ZNF48 ZNF213 ZC3H11A REST ZNF623 PPARG AMT ENSG00000235236 ENSG00000230454 RBM6 QRICH1 RBM5 WDR6 IP6K2 ENSG00000223343 BSN-AS2
GH03I049670 Enhancer 1.1 Ensembl ENCODE 10.8 -117.2 -117155 1.8 HDGF FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 RUNX3 RXRA APEH AMT BSN-AS1 BSN-AS2 BSN CDHR4 UBA7 MST1 PIR32155 GC03P049421
GH03I049666 Enhancer 0.8 ENCODE 11.5 -112.1 -112141 0.8 ELF3 MLX ARID4B RAD21 THRB RARA ETS1 CREM THAP11 MIXL1 BSN-AS1 BSN BSN-AS2 CDHR4 AMT PIR32155 APEH GC03P049421
GH03I049665 Enhancer 0.8 ENCODE 11.5 -111.6 -111617 0.2 ELF3 SOX13 TFAP4 SAP130 MLX ARID4B MAX RAD21 THRB RARA BSN-AS1 BSN BSN-AS2 PIR32155 APEH GC03P049421
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BSN-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BSN-AS2 Gene

Genomic Locations for BSN-AS2 Gene
chr3:49,549,306-49,554,366
(GRCh38/hg38)
Size:
5,061 bases
Orientation:
Minus strand
chr3:49,586,739-49,591,799
(GRCh37/hg19)

Genomic View for BSN-AS2 Gene

Genes around BSN-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BSN-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BSN-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BSN-AS2 Gene

Proteins for BSN-AS2 Gene

Post-translational modifications for BSN-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BSN-AS2 Gene

Domains & Families for BSN-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BSN-AS2 Gene

Function for BSN-AS2 Gene

Phenotypes From GWAS Catalog for BSN-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BSN-AS2 Gene

Localization for BSN-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BSN-AS2 Gene

Pathways & Interactions for BSN-AS2 Gene

SuperPathways for BSN-AS2 Gene

No Data Available

Interacting Proteins for BSN-AS2 Gene

Gene Ontology (GO) - Biological Process for BSN-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BSN-AS2 Gene

Drugs & Compounds for BSN-AS2 Gene

No Compound Related Data Available

Transcripts for BSN-AS2 Gene

mRNA/cDNA for BSN-AS2 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BSN-AS2 Gene

BSN antisense RNA 2 (head to head):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BSN-AS2 Gene

No ASD Table

Relevant External Links for BSN-AS2 Gene

GeneLoc Exon Structure for
BSN-AS2
ECgene alternative splicing isoforms for
BSN-AS2

Expression for BSN-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BSN-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for BSN-AS2 Gene

This gene is overexpressed in Testis (x17.6).

SOURCE GeneReport for Unigene cluster for BSN-AS2 Gene:

Hs.435651
genes like me logo Genes that share expression patterns with BSN-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BSN-AS2 Gene

Orthologs for BSN-AS2 Gene

Evolution for BSN-AS2 Gene

ENSEMBL:
Gene Tree for BSN-AS2 (if available)
TreeFam:
Gene Tree for BSN-AS2 (if available)

No data available for Orthologs for BSN-AS2 Gene

Paralogs for BSN-AS2 Gene

No data available for Paralogs for BSN-AS2 Gene

Variants for BSN-AS2 Gene

Sequence variations from dbSNP and Humsavar for BSN-AS2 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000707980 -- 49,554,988(-) C/T upstream_transcript_variant
rs1001610963 -- 49,554,140(-) T/G non_coding_transcript_variant
rs1001641871 -- 49,554,293(-) C/A/T non_coding_transcript_variant
rs1001761653 -- 49,554,504(-) A/G upstream_transcript_variant
rs1001944658 -- 49,552,460(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for BSN-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3369484 CNV duplication 20981092
nsv834687 CNV loss 17160897

Additional Variant Information for BSN-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BSN-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BSN-AS2 Gene

Disorders for BSN-AS2 Gene

Additional Disease Information for BSN-AS2

No disorders were found for BSN-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BSN-AS2 Gene

Publications for BSN-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for BSN-AS2 Gene

Sources for BSN-AS2 Gene

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