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Aliases for BSN-AS2 Gene

Subcategory (RNA class) for BSN-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BSN-AS2 Gene

  • BSN Antisense RNA 2 (Head To Head) 2 3 5
  • BSN Antisense RNA 2 (Non-Protein Coding) 2

External Ids for BSN-AS2 Gene

Summaries for BSN-AS2 Gene

GeneCards Summary for BSN-AS2 Gene

BSN-AS2 (BSN Antisense RNA 2 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BSN-AS2 Gene

Genomics for BSN-AS2 Gene

Regulatory Elements for BSN-AS2 Gene

Enhancers for BSN-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G049484 1.4 Ensembl ENCODE dbSUPER 21.1 +69.1 69130 1.9 FOXA2 MLX ZFP64 ARID4B ZNF48 REST PPARG ZNF623 ZNF518A KAT8 AMT ENSG00000230454 ENSG00000235236 ENSG00000223343 BSN-AS2 WDR6 NICN1 FAM212A NAT6 BSN
GH03G049670 1.2 Ensembl ENCODE 10.8 -117.2 -117155 1.8 HDGF FOXA2 ZFP64 ARID4B DMAP1 YY1 ZNF143 SP5 REST MIER3 AMT BSN-AS1 BSN BSN-AS2 CDHR4 UBA7 MST1 APEH PIR32155
GH03G049747 1.1 ENCODE 9.9 -194.0 -194033 1.9 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS FAM212A PHF5EP IP6K1 QRICH1 GMPPB AMIGO3 RNF123 ENSG00000225399 IMPDH2 BSN-AS1
GH03G049666 0.9 ENCODE 11.4 -112.1 -112141 0.8 ELF3 HDGF MLX SREBF2 ARID4B THRB RAD21 RARA EGR1 ZNF143 BSN-AS1 BSN BSN-AS2 CDHR4 AMT PIR32155 APEH
GH03G049587 0.8 ENCODE 11.6 -33.4 -33377 0.2 DRAP1 TBP PKNOX1 IRF2 ATF1 SAP130 TAF1 ARID4B GATA4 POLR2A BSN BSN-AS2 BSN-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BSN-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for BSN-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000152242 -134 1001 HDGF ATF1 MLX ARNT ARID4B SIN3A DMAP1 YBX1 ELK1 ZNF143

Genomic Location for BSN-AS2 Gene

Chromosome:
3
Start:
49,549,306 bp from pter
End:
49,554,366 bp from pter
Size:
5,061 bases
Orientation:
Minus strand

Genomic View for BSN-AS2 Gene

Genes around BSN-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BSN-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BSN-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BSN-AS2 Gene

Proteins for BSN-AS2 Gene

Post-translational modifications for BSN-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BSN-AS2 Gene

Domains & Families for BSN-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BSN-AS2 Gene

Function for BSN-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BSN-AS2 Gene

Localization for BSN-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BSN-AS2 Gene

Pathways & Interactions for BSN-AS2 Gene

SuperPathways for BSN-AS2 Gene

No Data Available

Interacting Proteins for BSN-AS2 Gene

Gene Ontology (GO) - Biological Process for BSN-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BSN-AS2 Gene

Drugs & Compounds for BSN-AS2 Gene

No Compound Related Data Available

Transcripts for BSN-AS2 Gene

mRNA/cDNA for BSN-AS2 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BSN-AS2 Gene

BSN antisense RNA 2 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BSN-AS2 Gene

No ASD Table

Relevant External Links for BSN-AS2 Gene

GeneLoc Exon Structure for
BSN-AS2
ECgene alternative splicing isoforms for
BSN-AS2

Expression for BSN-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BSN-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for BSN-AS2 Gene

This gene is overexpressed in Testis (x17.6).

SOURCE GeneReport for Unigene cluster for BSN-AS2 Gene:

Hs.435651
genes like me logo Genes that share expression patterns with BSN-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BSN-AS2 Gene

Orthologs for BSN-AS2 Gene

Evolution for BSN-AS2 Gene

ENSEMBL:
Gene Tree for BSN-AS2 (if available)
TreeFam:
Gene Tree for BSN-AS2 (if available)

No data available for Orthologs for BSN-AS2 Gene

Paralogs for BSN-AS2 Gene

No data available for Paralogs for BSN-AS2 Gene

Variants for BSN-AS2 Gene

Sequence variations from dbSNP and Humsavar for BSN-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000252790 -- 49,554,786(+) TCCCT(-/GGCCCC)GGCCC upstream-variant-2KB, cds-indel
rs1000707980 -- 49,554,988(+) CGGCC(C/T)TTCCT intron-variant, upstream-variant-2KB
rs1001610963 -- 49,554,140(+) TGTCC(G/T)TATGA nc-transcript-variant, upstream-variant-2KB
rs1001641871 -- 49,554,293(+) CAGGG(A/C/T)CCTCG nc-transcript-variant, upstream-variant-2KB
rs1001761653 -- 49,554,504(+) GGGAG(A/G)TGGCG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for BSN-AS2 Gene

Variant ID Type Subtype PubMed ID
esv3369484 CNV duplication 20981092
nsv834687 CNV loss 17160897

Relevant External Links for BSN-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BSN-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BSN-AS2 Gene

Disorders for BSN-AS2 Gene

Relevant External Links for BSN-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BSN-AS2

No disorders were found for BSN-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BSN-AS2 Gene

Publications for BSN-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for BSN-AS2 Gene

Sources for BSN-AS2 Gene

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