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Aliases for BSDC1 Gene

Aliases for BSDC1 Gene

  • BSD Domain Containing 1 2 3

External Ids for BSDC1 Gene

Previous GeneCards Identifiers for BSDC1 Gene

  • GC01M032500
  • GC01M032603
  • GC01M032831
  • GC01M030946
  • GC01M032833

Summaries for BSDC1 Gene

GeneCards Summary for BSDC1 Gene

BSDC1 (BSD Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BSDC1 Gene

Genomics for BSDC1 Gene

Regulatory Elements for BSDC1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for BSDC1 Gene

Start:
32,365,103 bp from pter
End:
32,394,731 bp from pter
Size:
29,629 bases
Orientation:
Minus strand

Genomic View for BSDC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BSDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BSDC1 Gene

Proteins for BSDC1 Gene

  • Protein details for BSDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NW68-BSDC1_HUMAN
    Recommended name:
    BSD domain-containing protein 1
    Protein Accession:
    Q9NW68
    Secondary Accessions:
    • B4DMS7
    • B4DTI7
    • B4DTP7
    • B4E2X8
    • Q49AT8
    • Q68DY6
    • Q6IAA3
    • Q6MZK1
    • Q6UXS1
    • Q9HAL9

    Protein attributes for BSDC1 Gene

    Size:
    430 amino acids
    Molecular mass:
    47163 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BSDC1 Gene

neXtProt entry for BSDC1 Gene

Proteomics data for BSDC1 Gene at MOPED

Post-translational modifications for BSDC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for BSDC1 Gene

Domains for BSDC1 Gene

Protein Domains for BSDC1 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9NW68

UniProtKB/Swiss-Prot:

BSDC1_HUMAN :
  • Q9NW68
Domain:
  • Contains 1 BSD domain.
genes like me logo Genes that share domains with BSDC1: view

No data available for Gene Families for BSDC1 Gene

Function for BSDC1 Gene

Phenotypes for BSDC1 Gene

GenomeRNAi human phenotypes for BSDC1:
genes like me logo Genes that share phenotypes with BSDC1: view

Animal Model Products

CRISPR Products

miRNA for BSDC1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BSDC1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for BSDC1 Gene

Localization for BSDC1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BSDC1 Gene COMPARTMENTS Subcellular localization image for BSDC1 gene
Compartment Confidence
cytosol 2
nucleus 2
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for BSDC1 Gene

Pathways for BSDC1 Gene

SuperPathways for BSDC1 Gene

No Data Available

Interacting Proteins for BSDC1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000397759%0d%0a9606.ENSP00000414982%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: Q9NW68-BSDC1_HUMAN ENSP00000397759 for BSDC1 Gene via MINT STRING I2D

Gene Ontology (GO) - Biological Process for BSDC1 Gene

None

No data available for Pathways by source for BSDC1 Gene

Transcripts for BSDC1 Gene

Unigene Clusters for BSDC1 Gene

BSD domain containing 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BSDC1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for BSDC1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BSDC1 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c · 10d ^ 11 ^ 12 ^
SP1: - - - -
SP2: - - - - -
SP3: - - - - -
SP4: - -
SP5: - - - - -
SP6: - -
SP7: - -
SP8: - - -
SP9: - - - - - - - - -
SP10: - - - - - - - - - - - - - - - - - - -
SP11: - - - - - -
SP12: -
SP13: -
SP14:

ExUns: 13a · 13b ^ 14a · 14b · 14c
SP1: -
SP2: -
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10: -
SP11:
SP12:
SP13:
SP14:

Relevant External Links for BSDC1 Gene

GeneLoc Exon Structure for
BSDC1
ECgene alternative splicing isoforms for
BSDC1

Expression for BSDC1 Gene

mRNA expression in normal human tissues for BSDC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for BSDC1 Gene

SOURCE GeneReport for Unigene cluster for BSDC1 Gene Hs.353454

genes like me logo Genes that share expressions with BSDC1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BSDC1 Gene

Orthologs for BSDC1 Gene

This gene was present in the common ancestor of animals.

Orthologs for BSDC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BSDC1 35
  • 99.22 (n)
  • 99.07 (a)
BSDC1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BSDC1 35
  • 90.54 (n)
  • 92.33 (a)
BSDC1 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BSDC1 35
  • 91.09 (n)
  • 93.26 (a)
BSDC1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bsdc1 35
  • 89.2 (n)
  • 92.72 (a)
Bsdc1 16
Bsdc1 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BSDC1 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BSDC1 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bsdc1 35
  • 88.65 (n)
  • 91.31 (a)
chicken
(Gallus gallus)
Aves BSDC1 35
  • 73.43 (n)
  • 73.66 (a)
BSDC1 36
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BSDC1 36
  • 69 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.12504 35
tropical clawed frog
(Silurana tropicalis)
Amphibia bsdc1 35
  • 66.5 (n)
  • 70.05 (a)
Str.3373 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.825 35
zebrafish
(Danio rerio)
Actinopterygii bsdc1 35
  • 66.08 (n)
  • 67.25 (a)
bsdc1 36
  • 65 (a)
OneToOne
wufb51h12 35
worm
(Caenorhabditis elegans)
Secernentea Y97E10AR.6 36
  • 18 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToOne
Species with no ortholog for BSDC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BSDC1 Gene

ENSEMBL:
Gene Tree for BSDC1 (if available)
TreeFam:
Gene Tree for BSDC1 (if available)

Paralogs for BSDC1 Gene

No data available for Paralogs for BSDC1 Gene

Variants for BSDC1 Gene

Sequence variations from dbSNP and Humsavar for BSDC1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2496 -- 32,375,592(+) TTCCA(C/T)TACAC intron-variant
rs8430 -- 32,365,505(-) CTGCT(C/T)TGGTG utr-variant-3-prime, nc-transcript-variant
rs472682 -- 32,378,736(-) GCCCT(C/T)TACAC reference, synonymous-codon, nc-transcript-variant
rs476153 -- 32,365,942(-) ATGTC(A/C/G/T)GATGC utr-variant-3-prime, nc-transcript-variant
rs476799 -- 32,381,983(+) gcact(C/T)tggga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BSDC1 Gene

Variant ID Type Subtype PubMed ID
dgv211n71 CNV Loss 21882294
esv7048 CNV Gain 19470904

Relevant External Links for BSDC1 Gene

HapMap Linkage Disequilibrium report
BSDC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BSDC1 Gene

Disorders for BSDC1 Gene

No disorders were found for BSDC1 Gene.

No data available for UniProtKB/Swiss-Prot for BSDC1 Gene

Publications for BSDC1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for BSDC1 Gene

Sources for BSDC1 Gene

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