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Aliases for BRWD1-AS2 Gene

Subcategory (RNA class) for BRWD1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BRWD1-AS2 Gene

  • BRWD1 Antisense RNA 2 2 5
  • BRWD1 Intronic Transcript 2 (Non-Protein Coding) 2 3
  • BRWD1-IT2 3 4
  • Chromosome 21 Open Reading Frame 87 2
  • ATP1A1 Antisense Gene Protein 1 4
  • BRWD1 Intronic Transcript 2 4
  • Non-Protein Coding RNA 257 2
  • ATP1A1 Antisense RNA 1 4
  • NCRNA00257 4
  • C21orf87 4

External Ids for BRWD1-AS2 Gene

Previous HGNC Symbols for BRWD1-AS2 Gene

  • C21orf87
  • NCRNA00257
  • BRWD1-IT2

Summaries for BRWD1-AS2 Gene

GeneCards Summary for BRWD1-AS2 Gene

BRWD1-AS2 (BRWD1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRWD1-AS2 Gene

Genomics for BRWD1-AS2 Gene

Regulatory Elements for BRWD1-AS2 Gene

Enhancers for BRWD1-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F039316 1.6 FANTOM5 Ensembl ENCODE 26.2 +6.0 5993 6.5 PKNOX1 ATF1 CREB3L1 ZNF121 GATA2 FOS REST ZNF623 SMARCB1 ZNF592 PSMG1 BRWD1-AS2 HMGN1 BRWD1-AS1 BRWD1
GH21F039114 0.8 Ensembl ENCODE 4.9 -198.6 -198630 1.0 CTCF PKNOX1 SP5 CEBPB ZIC2 JUND GLIS1 CEBPA PBX2 PRDM10 BRWD1-AS1 BRWD1-AS2 RPL23AP12 ENSG00000237609
GH21F039311 0.2 ENCODE 0.8 -0.4 -429 3.4 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 HMGN1 PSMG1 RNF6P1 MYL6P2 BRWD1 BRWD1-AS1 WRB SH3BGR BRWD1-AS2 GC21M039279
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BRWD1-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for BRWD1-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000316333 -407 3001 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263

Genomic Location for BRWD1-AS2 Gene

Chromosome:
21
Start:
39,313,907 bp from pter
End:
39,314,962 bp from pter
Size:
1,056 bases
Orientation:
Plus strand

Genomic View for BRWD1-AS2 Gene

Genes around BRWD1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRWD1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRWD1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRWD1-AS2 Gene

Proteins for BRWD1-AS2 Gene

  • Protein details for BRWD1-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P59051-BRAS2_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by BRWD1-AS2
    Protein Accession:
    P59051
    Secondary Accessions:
    • A1L3W1
    • D3DSH8

    Protein attributes for BRWD1-AS2 Gene

    Size:
    145 amino acids
    Molecular mass:
    16132 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BRWD1-AS2 Gene

Post-translational modifications for BRWD1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRWD1-AS2 Gene

Domains & Families for BRWD1-AS2 Gene

Protein Domains for BRWD1-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BRWD1-AS2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BRWD1-AS2 Gene

Function for BRWD1-AS2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRWD1-AS2 Gene

Localization for BRWD1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BRWD1-AS2 Gene

Pathways & Interactions for BRWD1-AS2 Gene

SuperPathways for BRWD1-AS2 Gene

No Data Available

Interacting Proteins for BRWD1-AS2 Gene

Gene Ontology (GO) - Biological Process for BRWD1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRWD1-AS2 Gene

Transcripts for BRWD1-AS2 Gene

mRNA/cDNA for BRWD1-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BRWD1-AS2 Gene

No ASD Table

Relevant External Links for BRWD1-AS2 Gene

GeneLoc Exon Structure for
BRWD1-AS2
ECgene alternative splicing isoforms for
BRWD1-AS2

Expression for BRWD1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BRWD1-AS2 Gene

Protein differential expression in normal tissues from HIPED for BRWD1-AS2 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for BRWD1-AS2 Gene



Protein tissue co-expression partners for BRWD1-AS2 Gene

- Elite partner
genes like me logo Genes that share expression patterns with BRWD1-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BRWD1-AS2 Gene

Orthologs for BRWD1-AS2 Gene

Evolution for BRWD1-AS2 Gene

ENSEMBL:
Gene Tree for BRWD1-AS2 (if available)
TreeFam:
Gene Tree for BRWD1-AS2 (if available)

No data available for Orthologs for BRWD1-AS2 Gene

Paralogs for BRWD1-AS2 Gene

No data available for Paralogs for BRWD1-AS2 Gene

Variants for BRWD1-AS2 Gene

Sequence variations from dbSNP and Humsavar for BRWD1-AS2 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs112046341 -- 39,312,988(+) GGCGG(C/G)GGGCG intron-variant, upstream-variant-2KB
rs113271475 -- 39,314,109(+) GGGCC(A/T)GTGCG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113983384 -- 39,314,042(+) TCGCG(G/T)GTTGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115252782 -- 39,315,319(+) TATAT(A/G)TATTT intron-variant, upstream-variant-2KB
rs115796978 -- 39,314,313(+) CAGCA(G/T)CCCGG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BRWD1-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv587480 CNV loss 21841781
nsv587482 CNV loss 21841781
nsv587483 CNV loss 21841781

Relevant External Links for BRWD1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRWD1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BRWD1-AS2 Gene

Disorders for BRWD1-AS2 Gene

Relevant External Links for BRWD1-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BRWD1-AS2

No disorders were found for BRWD1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BRWD1-AS2 Gene

Publications for BRWD1-AS2 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A. … Antonarakis S.E. (Genomics 2002) 2 3 4 64
  2. Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. (PMID: 20494980) Warnatz H.J. … Yaspo M.L. (Nucleic Acids Res. 2010) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 4 64

Products for BRWD1-AS2 Gene

Sources for BRWD1-AS2 Gene

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