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Aliases for BRWD1-AS1 Gene

Subcategory (RNA class) for BRWD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BRWD1-AS1 Gene

  • BRWD1 Antisense RNA 1 2 3 5
  • BRWD1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BRWD1-AS1 Gene

Previous GeneCards Identifiers for BRWD1-AS1 Gene

  • GC00U932973
  • GC21P040688
  • GC21P040689
  • GC21P040692
  • GC21P040694

Summaries for BRWD1-AS1 Gene

GeneCards Summary for BRWD1-AS1 Gene

BRWD1-AS1 (BRWD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRWD1-AS1 Gene

Genomics for BRWD1-AS1 Gene

Regulatory Elements for BRWD1-AS1 Gene

Enhancers for BRWD1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F039316 1.6 FANTOM5 Ensembl ENCODE 8.5 +4.2 4193 6.5 PKNOX1 ATF1 CREB3L1 ZNF121 GATA2 FOS REST ZNF623 SMARCB1 ZNF592 PSMG1 BRWD1-AS2 HMGN1 BRWD1-AS1 BRWD1
GH21F039311 0.2 ENCODE 8.4 -2.2 -2229 3.4 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 HMGN1 PSMG1 RNF6P1 MYL6P2 BRWD1 BRWD1-AS1 WRB SH3BGR BRWD1-AS2 GC21M039279
GH21F039125 1 Ensembl ENCODE 6.1 -189.6 -189601 1.0 YBX3 ELF3 HDGF RAD21 RARA ZNF207 EGR2 ZNF654 CEBPB REST ERG PSMG1 BRWD1-AS1 RPL23AP12 ENSG00000237609
GH21F039124 0.2 ENCODE 6.1 -190.9 -190923 1.1 RAD21 ERG BRWD1-AS1 PSMG1 RPL23AP12 ENSG00000237609
GH21F039114 0.8 Ensembl ENCODE 5.1 -200.4 -200430 1.0 CTCF PKNOX1 SP5 CEBPB ZIC2 JUND GLIS1 CEBPA PBX2 PRDM10 BRWD1-AS1 BRWD1-AS2 RPL23AP12 ENSG00000237609
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BRWD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BRWD1-AS1 Gene

Chromosome:
21
Start:
39,315,707 bp from pter
End:
39,323,218 bp from pter
Size:
7,512 bases
Orientation:
Plus strand

Genomic View for BRWD1-AS1 Gene

Genes around BRWD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRWD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRWD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRWD1-AS1 Gene

Proteins for BRWD1-AS1 Gene

Post-translational modifications for BRWD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRWD1-AS1 Gene

Domains & Families for BRWD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BRWD1-AS1 Gene

Function for BRWD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRWD1-AS1 Gene

Localization for BRWD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BRWD1-AS1 Gene

Pathways & Interactions for BRWD1-AS1 Gene

SuperPathways for BRWD1-AS1 Gene

No Data Available

Interacting Proteins for BRWD1-AS1 Gene

Gene Ontology (GO) - Biological Process for BRWD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRWD1-AS1 Gene

Transcripts for BRWD1-AS1 Gene

mRNA/cDNA for BRWD1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BRWD1-AS1 Gene

BRWD1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BRWD1-AS1 Gene

No ASD Table

Relevant External Links for BRWD1-AS1 Gene

GeneLoc Exon Structure for
BRWD1-AS1
ECgene alternative splicing isoforms for
BRWD1-AS1

Expression for BRWD1-AS1 Gene

mRNA expression in normal human tissues for BRWD1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BRWD1-AS1 Gene

This gene is overexpressed in Testis (x38.3).

SOURCE GeneReport for Unigene cluster for BRWD1-AS1 Gene:

Hs.588102
genes like me logo Genes that share expression patterns with BRWD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BRWD1-AS1 Gene

Orthologs for BRWD1-AS1 Gene

Evolution for BRWD1-AS1 Gene

ENSEMBL:
Gene Tree for BRWD1-AS1 (if available)
TreeFam:
Gene Tree for BRWD1-AS1 (if available)

No data available for Orthologs for BRWD1-AS1 Gene

Paralogs for BRWD1-AS1 Gene

No data available for Paralogs for BRWD1-AS1 Gene

Variants for BRWD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for BRWD1-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs11088470 -- 39,317,236(+) ACACA(A/G)TTCAA intron-variant
rs111370822 -- 39,323,594(+) GGAGC(C/T)GGAGG downstream-variant-500B, upstream-variant-2KB
rs112329226 -- 39,320,957(+) GCCAC(A/G)TGCCT intron-variant
rs112509624 -- 39,321,393(+) TGAGC(C/T)GAGAT intron-variant
rs112513635 -- 39,321,211(+) AGGCC(A/G)GGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BRWD1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1123561 CNV deletion 24896259
nsv587480 CNV loss 21841781
nsv587482 CNV loss 21841781
nsv587483 CNV loss 21841781

Relevant External Links for BRWD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRWD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BRWD1-AS1 Gene

Disorders for BRWD1-AS1 Gene

Relevant External Links for BRWD1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BRWD1-AS1

No disorders were found for BRWD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BRWD1-AS1 Gene

Publications for BRWD1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for BRWD1-AS1 Gene

Sources for BRWD1-AS1 Gene

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