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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BRMS1 Gene

protein-coding   GIFtS: 55
GCID: GC11M066104

breast cancer metastasis suppressor 1

 Explore 13 diseases affiliated with
BRMS1 via our new
 Human Malady Compendium 
Biological research products
for BRMS1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Breast Cancer Metastasis Suppressor 11 2
DKFZP564A0631
Breast Cancer Metastasis-Suppressor 12

External Ids:    HGNC: 172621   Entrez Gene: 258552   Ensembl: ENSG000001747447   OMIM: 6062595   UniProtKB: Q9HCU93   

Export aliases for BRMS1 gene to outside databases

Previous GC identifers: GC11M068638 GC14P030082 GC14P034285 GC11M065881 GC11M065882 GC11M065861 GC11M062437


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for BRMS1:
This gene reduces the metastatic potential, but not the tumorogenicity, of human breast cancer and melanoma cell lines.
The protein encoded by this gene localizes primarily to the nucleus and is a component of the mSin3a family of histone
deacetylase complexes (HDAC). The protein contains two coiled-coil motifs and several imperfect leucine zipper motifs.
Alternative splicing results in two transcript variants encoding different isoforms. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: BRMS1_HUMAN, Q9HCU9
Function: Transcriptional repressor. Down-regulates transcription activation by NF-kappa-B by promoting the
deacetylation of RELA at 'Lys-310'. Promotes HDAC1 binding to promoter regions. Down-regulates expression of
anti-apoptotic genes that are controlled by NF-kappa-B. Promotes apoptosis in cells that have inadequate adherence to
a substrate, a process called anoikis, and may thereby inhibit metastasis. May be a mediator of metastasis suppression
in breast carcinoma

Gene Wiki entry for BRMS1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_167190.1  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the BRMS1 gene promoter:
         AP-1   ATF-2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidBRMS1 promoter sequence
   Search SABiosciences Chromatin IP Primers for BRMS1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BRMS1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13-q13.2   Ensembl cytogenetic band:  11q13.2   HGNC cytogenetic band: 11q13-q13.2

BRMS1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BRMS1 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M066104:  view genomic region     (about GC identifiers)

Start:
66,104,804 bp from pter      End:
66,112,596 bp from pter
Size:
7,793 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: BRMS1_HUMAN, Q9HCU9 (See protein sequence)
Recommended Name: Breast cancer metastasis-suppressor 1  
Size: 246 amino acids; 28461 Da
Subunit: Interacts with SNX6, HDAC1 and RELA. Interacts with ARID4A. Identified in mSin3A corepressor complexes
together with SIN3A, SIN3B, RBBP4, RBBP7, SAP30, SUDS3, ARID4A, HDAC1 and HDAC2
Subcellular location: Nucleus. Cytoplasm. Note=Predominantly nuclear
1 PDB 3D structure from and Proteopedia for BRMS1:
2XUS (3D)    
Secondary accessions: Q6IAI2

Explore the universe of human proteins at neXtProt for BRMS1: NX_Q9HCU9

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9HCU9

  • BRMS1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001020128.1  NP_056214.1  

    ENSEMBL proteins: 
     ENSP00000396052   ENSP00000431510   ENSP00000353042   ENSP00000434591   ENSP00000433740  

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    Uscn Proteins for BRMS1

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA17000776
    GO:0005737cytoplasm IDA--


    BRMS1 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    BRMS1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR013907 Sds3

    Graphical View of Domain Structure for InterPro Entry Q9HCU9

    ProtoNet protein and cluster: Q9HCU9

    1 Blocks protein family: IPB013907 Sds3-like

    UniProtKB/Swiss-Prot: BRMS1_HUMAN, Q9HCU9
    Similarity: Belongs to the BRMS1 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: BRMS1_HUMAN, Q9HCU9
    Function: Transcriptional repressor. Down-regulates transcription activation by NF-kappa-B by promoting the
    deacetylation of RELA at 'Lys-310'. Promotes HDAC1 binding to promoter regions. Down-regulates expression of
    anti-apoptotic genes that are controlled by NF-kappa-B. Promotes apoptosis in cells that have inadequate adherence to
    a substrate, a process called anoikis, and may thereby inhibit metastasis. May be a mediator of metastasis suppression
    in breast carcinoma

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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
    GO:0051059NF-kappaB binding IDA17000776


    BRMS1 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for BRMS1:
     Increased S DNA content  Increased number of cells in m 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for BRMS1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/38 Interacting proteins for BRMS1 (Q9HCU91, 2, 3 ENSP000003960524) via UniProtKB, MINT, STRING, and/or I2D (see all 38)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GOLGB1Q147892, 3, ENSP000003418484MINT-64181 I2D: score=4 STRING: ENSP00000341848
    DNAJB6O751901, 3, ENSP000002621774EBI-714781,EBI-1053164 I2D: score=2 STRING: ENSP00000262177
    HDAC4P565241, 3, ENSP000002646064EBI-714781,EBI-308629 I2D: score=2 STRING: ENSP00000264606
    HDAC6Q9UBN71, 3, ENSP000003340614EBI-714781,EBI-301697 I2D: score=2 STRING: ENSP00000334061
    NMIQ132871, 3, ENSP000002433464EBI-714781,EBI-372942 I2D: score=2 STRING: ENSP00000243346
    About this table

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006915apoptotic process IEA--
    GO:0009987cellular process ----
    GO:0019987negative regulation of anti-apoptosis ----
    GO:0032088negative regulation of NF-kappaB transcription factor activity IDA17000776


    BRMS1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for BRMS1
    Search CenterWatch for drugs/clinical trials and news about BRMS1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for BRMS1 gene (3 alternative transcripts): 
    NM_001024957.1  NM_015399.3  NM_001024958.1  

    Unigene Cluster for BRMS1:

    Breast cancer metastasis suppressor 1
    Hs.100426  [show with all ESTs]
    Unigene Representative Sequence: BM472938
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000425825(uc001oho.1) ENST00000524699 ENST00000359957(uc001ohp.1)
    ENST00000530238(uc009yre.3) ENST00000527375 ENST00000530756 ENST00000534617
    ENST00000525127 ENST00000529544

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    Additional cDNA sequence: 

    AF147350.1 AF159141.1 AK310991.1 AK313773.1 AL050008.1 BC009834.2 CR457173.1 

    13 DOTS entries:

    DT.92434986  DT.203143  DT.100020596  DT.95073095  DT.95073094  DT.120734057  DT.100020597  DT.95073092 
    DT.100793535  DT.95073093  DT.95073096  DT.95154811  DT.100754044 

    24/178 AceView cDNA sequences (see all 178):

    CA487347 BF531086 AW250439 BQ681248 CB131446 BU538881 CR617084 BU146806 
    BF037901 AW732306 BQ059745 BI836574 CR620200 BG166370 BQ674777 BU838210 
    BM014765 CA454165 AI804766 BE792276 CR618839 BQ069890 CB215122 CR599820 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for BRMS1 (see all 6)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b
    SP1:        -                                                                                 
    SP2:        -                             -                                                   
    SP3:                                                                          -               
    SP4:        -                                                                                 
    SP5:        -                                                                                 


    ECgene alternative splicing isoforms for BRMS1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    BRMS1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTTCAAGAGA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See BRMS1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for BRMS1

    SOURCE GeneReport for Unigene cluster: Hs.100426

    UniProtKB/Swiss-Prot: BRMS1_HUMAN, Q9HCU9
    Tissue specificity: Expression levels are higher in term placentas than in early placentas. Low levels of expression
    observed in normal pregnancies and in molar pregnancies

        SABiosciences Expression via Pathway-Focused PCR Array including BRMS1: 
              Tumor Metastasis in human mouse rat

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for BRMS1 gene from 2/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    zebrafish
    (Danio rerio)
    Actinopterygii brms11 breast cancer metastasis-suppressor 1 62.16(n)
    60.25(a)
      791681  NM_200097.1  NP_956391.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG44003   -- 43(a)   11D1   --


    ENSEMBL Gene Tree for BRMS1 (if available)
    TreeFam Gene Tree for BRMS1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for BRMS1 gene
    SUDS32  BRMS1L2  
    2 SIMAP similar genes for BRMS1 using alignment to 5 protein entries:     BRMS1_HUMAN (see all proteins):
    DKFZp564A063    BRMS1L

    BRMS1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/135 NCBI SNPs in BRMS1 are shown (see all 135    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1399582711,2
    --66106090(+) GGAAGC/GCTTGG 2 -- int10--------
    rs2021044391,2
    --66106171(+) GTCACG/TTGGGC 2 -- int10--------
    rs2010480771,2
    --66106186(+) GCGGCA/CCCCAC 2 -- int10--------
    rs1434899521,2
    C,F,--66106261(+) CCTGTG/AGTGGG 2 -- int11Minor allele frequency- A:0.05EU 1323
    rs2002738401,2
    --66106294(+) TGGCAC/GGTGAC 2 -- int10--------
    rs1852829251,2
    --66106426(+) GGGGTC/TGTCCT 2 -- int10--------
    rs1454388031,2
    --66106432(+) GTCCTA/GGAACC 2 -- int10--------
    rs1488343201,2
    --66106529(+) CTCACA/TCTGCA 2 -- int10--------
    rs1425602181,2
    --66106538(+) CAGCAC/TTGGCC 2 -- int10--------
    rs1900381521,2
    --66106578(+) CAGACA/GCAGGG 2 -- int10--------

    HapMap Linkage Disequilibrium report for BRMS1 (66104804 - 66112596 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for BRMS1: --

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    BRMS1 for disorders           About GeneDecksing

    OMIM gene information: 606259    OMIM disorders: --

    13 diseases for BRMS1:    About MalaCards
    breast cancer    melanoma    intrahepatic cholangiocarcinoma    laryngitis
    laryngeal carcinoma    melanoma metastasis    breast carcinoma    cholangiocarcinoma
    ovarian carcinoma    carcinoma    retinoblastoma    lung cancer
    schizophrenia

    1 disease from the University of Copenhagen DISEASES database for BRMS1:
    Breast cancer

    8 Novoseek disease relationships for BRMS1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    breast carcinoma 60.6 8 11827072 (4), 11822878 (1), 11774238 (1), 11280719 (1) (see all 5)
    primary tumor 51.7 2 15592684 (1), 16681721 (1)
    breast cancer metastatic 50.4 1 15252837 (1)
    metastasis 49.2 28 11822878 (5), 16681721 (5), 11827072 (4), 15592684 (2) (see all 9)
    breast cancer 45.7 13 15592684 (3), 16681721 (3), 15252837 (2), 11822878 (1) (see all 6)
    melanoma 34.7 10 11822878 (4), 16681721 (3)
    tumors 11.2 14 11822878 (3), 16681721 (3), 11827072 (1), 17896182 (1)
    carcinoma 10.7 2 15252837 (1)


    Export disorders for BRMS1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for BRMS1 gene, integrated from 9 sources (see all 60):
    (articles sorted by number of sources associating them with BRMS1)
        Utopia: connect your pdf to the dynamic
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    1. Functional evidence for a novel human breast carcinoma metastasis suppressor, BRMS1, encoded at chromosome 11q13. (PubMed id 10850410)1, 2, 3 Seraj M.J.... Welch D.R. (2000)
    2. Sorting nexin 6 interacts with breast cancer metastasis suppressor-1 and promotes transcriptional repression. (PubMed id 20830743)1, 2 Rivera J.... Bravo J. (2010)
    3. Breast cancer metastasis suppressor 1 functions as a corepressor by enhancing histone deacetylase 1-mediated deacetylation of RelA/p 65 and promoting apoptosis. (PubMed id 17000776)1, 2 Liu Y....Jones D.R. (2006)
    4. Breast cancer metastasis suppressor 1 (BRMS1) forms complexes with retinoblastoma-binding protein 1 (RBP1) and the mSin3 histone deacetylase complex and represses transcription. (PubMed id 14581478)1, 2 Meehan W.J....Welch D.R. (2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Transcriptional expression of genes involved in cell invasion and migration by normal and tumoral trophoblast cells. (PubMed id 12414911)1, 2 Janneau J.-L.... Bellet D. (2002)
    7. Suppression of human melanoma metastasis by the metastasis suppressor gene, BRMS1. (PubMed id 11822878)1, 9 Shevde L.A....Welch D.R. (2002)
    8. Identification and characterization of the murine ortholog (brms1) of breast-cancer metastasis suppressor 1 (BRMS1). (PubMed id 11774238)1, 9 Samant R.S....Welch D.R. (2002)
    9. Microarray analysis reveals potential mechanisms of BRMS1-mediated metastasis suppression. (PubMed id 17896182)1, 9 Champine P.J....DeWald D.B. (2007)
    10. Reduced metastasis-suppressor gene mRNA-expression in breast cancer brain metastases. (PubMed id 15592684)1, 9 Stark A.M....Held-Feindt J. (2005)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 25855 HGNC: 17262 AceView: BRMS1 Ensembl:ENSG00000174744 euGenes: HUgn25855
    ECgene: BRMS1 H-InvDB: BRMS1

    (According to HUGE)
    About This Section
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for BRMS1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for BRMS1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for BRMS1 gene:
    Search GeneIP for patents involving BRMS1

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