BRIX1 Gene
protein-coding GIFtS : 50
GCID: GC05 P034953
BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) (Previous name: brix domain containing 2 ) (Previous symbol: BXDC2 )
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Aliasesfor BRIX1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases BRX1, Biogenesis Of Ribosomes, Homolog (S. Cerevisiae) 1 2 Brix Domain-Containing Protein 22 3 BRIX1 2 3 FLJ111001 BXDC21 2 3 Ribosome Biogenesis Protein BRX1 Homolog2 Brix Domain Containing 21 2
Export aliases for BRIX1 gene to outside databases
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Summariesfor BRIX1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: BRX1_HUMAN, Q8TDN6 Function : Required for biogenesis of the 60S ribosomal subunitGene Wiki entry for BRIX1 (BXDC2)
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Genomic Viewsfor BRIX1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000005.9 NC_018916.1 NT_006576.16 Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for BRIX1 Other transcription factors Search SABiosciences Chromatin IP Primers for BRIX1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BRIX1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5p13.2 Ensembl cytogenetic band: 5p13.2 HGNC cytogenetic band: 5p13.2 BRIX1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P034953: view genomic region
(about GC identifiers )
Start:
34,915,481 bp from pter
End:
34,926,101 bp from pter
Size:
10,621 bases
Orientation:
plus strand
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Proteinsfor BRIX1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: BRX1_HUMAN, Q8TDN6 (See
protein sequence )Recommended Name: Ribosome biogenesis protein BRX1 homolog Size : 353 amino acids; 41401 Da
Subcellular location : Nucleus, nucleolus
Secondary accessions : A8K0P5 Q3ZTT4 Q8N453 Q96DH1Explore the universe of human proteins at neXtProt for BRIX1: NX_Q8TDN6 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8TDN6 BRIX1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_060791.3 ENSEMBL proteins: ENSP00000338862 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
BRIX1 for ontologies About GeneDecksing BRIX1 Antibody Products: Assay Products for BRIX1:
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Protein
Domains / Familiesfor BRIX1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
BRIX1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8TDN6 ProtoNet protein and cluster: Q8TDN6
1 Blocks protein family : IPB007109 Brix domain UniProtKB/Swiss-Prot: BRX1_HUMAN, Q8TDN6 Similarity : Belongs to the BRX1 familySimilarity : Contains 1 Brix domain
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Functionfor BRIX1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: BRX1_HUMAN, Q8TDN6 Function : Required for biogenesis of the 60S ribosomal subunit
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BRIX1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BRIX1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BRIX1 (NM_018321 ) Sino Biological Human cDNA Clone for BRIX1 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BRIX1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BRIX1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRIX1
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003674 molecular_function
ND --
BRIX1 for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for BRIX1 :
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Pathways & Interactionsfor BRIX1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BRIX1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/751 Interacting proteins for BRIX1 (Q8TDN6 2 , 3 ENSP00000338862 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 751 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0042254 ribosome biogenesis
IEA --
BRIX1 for ontologies About GeneDecksing
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Drugs & Compoundsfor BRIX1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for BRIX1 Search CenterWatch for drugs/clinical trials and news about BRIX1 / BRX1
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Transcriptsfor BRIX1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for BRIX1 gene: NM_018321.3 Unigene Cluster for BRIX1:
BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) Hs.718510 [show with all ESTs ] Unigene Representative Sequence: BX648902 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000336767 (uc003jja.3 ) ENST00000510960 (uc011col.1 ) ENST00000515798 ENST00000510834 (uc003jiz.3 ) ENST00000506023 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BRIX1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BRIX1 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BRIX1 (NM_018321 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BRIX1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BRIX1
Additional cDNA sequence: AF347667.1 AK289610.1 AK303311.1 AK307492.1 AY364243.1 AY364244.1 BC001546.1 BC006014.1 BC036741.1 BX648902.1
12 DOTS entries : DT.100033743 DT.214328
DT.100724432 DT.92430524 DT.441509 DT.97843035 DT.444475 DT.92044223 DT.95375578 DT.97822164 DT.120802596 DT.309747 24/150 AceView cDNA sequences (see all 150 ):
AW001647 AW271982 BX952902 AA418699 BI963051 AA058396 AA576507 AA730033 AK001962 BM553394 AW469852 AW272659 AA454607 CR622822 BE888528 BM764158 BM762111 AA418770 AA857813 BU167897 BC001546 AW469857 BG289827 AA505598 GeneLoc Exon Structure
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Expression for BRIX1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section BRIX1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATCCCACTGC
About this image BRIX1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Lung Lung Bud Lung Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See BRIX1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for BRIX1 SOURCE GeneReport for Unigene cluster: Hs.718510 SABiosciences Expression via Pathway-Focused PCR Array including BRIX1 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BRIX1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat BRIX1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BRIX1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BRIX1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRIX1
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Orthologsfor BRIX1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for BRIX1 gene from 10/34 species (see all 34 ) About this table
ENSEMBL Gene Tree for BRIX1 (if available)TreeFam Gene Tree for BRIX1 (if available)
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Paralogsfor BRIX1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for BRIX1 gene 2 SIMAP similar genes for BRIX1 using alignment to 1 protein entry: BRX1_HUMAN :BRIX BXDC2
BRIX1 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for BRIX1 PGOHUM00000249656
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Genomic Variantsfor BRIX1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 5 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for BRIX1 (34915481 - 34926101 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for BRIX1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing BRIX1
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Disorders
/ Diseasesfor BRIX1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
BRIX1 for disorders About GeneDecksing 2 diseases for BRIX1 : About MalaCards treacher collins syndrome malaria Export disorders for BRIX1 gene to outside databases
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Publicationsfor BRIX1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for BRIX1 gene, integrated from 9 sources (see all 25 ): (articles sorted by number of sources associating them with BRIX1) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Brix from Xenopus laevis and brx1p from yeast define a new family of proteins involved in the biogenesis of large ribosomal subunits. (PubMed id 11843177) 1 , 2 Kaser A.... Kreil G. (2001) The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925) 1 Aichem A....Groettrup M. (2012) A census of human soluble protein complexes. (PubMed id 22939629) 1 Havugimana P.C....Emili A. (2012) Functional proteomics establishes the interaction of S IRT7 with chromatin remodeling complexes and expands its role in regulation of R NA polymerase I transcription. (PubMed id 22586326) 1 Tsai Y.C....Cristea I.M. (2012) Interactome study suggests multiple cellular functions of hepatoma-derived growth factor (HDGF). (PubMed id 21907836) 1 Zhao J....Yang P. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206) 1 Vinayagam A....Wanker E.E. (2011)
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External Searches for BRIX1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing BRIX1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing BRIX1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing BRIX1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for BRIX1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for BRIX1 gene: Search GeneIP for patents involving BRIX1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor BRIX1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for BRIX1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for BRIX1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BRIX1 OriGene Protein Over-expression Lysate for BRIX1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for BRIX1 OriGene 3'-UTR Clone for BRIX1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BRIX1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BRIX1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for BRIX1 OriGene Custom Protein Services for BRIX1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat BRIX1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing BRIX1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BRIX1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat BRIX1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BRIX1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BRIX1
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BRIX1
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