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Aliases for BRINP1 Gene

Aliases for BRINP1 Gene

  • Bone Morphogenetic Protein/Retinoic Acid Inducible Neural-Specific 1 2 3
  • Deleted In Bladder Cancer Chromosome Region Candidate 1 2 3
  • Deleted In Bladder Cancer Protein 1 3 4
  • Deleted In Bladder Cancer 1 2 3
  • DBCCR1 3 4
  • FAM5A 3 4
  • DBC1 3 4
  • BA574M5.1 (Deleted In Bladder Cancer Chromosome Region Candidate 1 (IB3089A)) 3
  • Bone Morphogenic Protein/Retinoic Acid Inducible Neural-Specific 1 3

External Ids for BRINP1 Gene

Previous HGNC Symbols for BRINP1 Gene

  • DBCCR1
  • DBC1

Previous GeneCards Identifiers for BRINP1 Gene

  • GC09M121917

Summaries for BRINP1 Gene

Entrez Gene Summary for BRINP1 Gene

  • This gene is located within a chromosomal region that shows loss of heterozygosity in some bladder cancers. It contains a 5' CpG island that may be a frequent target of hypermethylation, and it may undergo hypermethylation-based silencing in some bladder cancers. [provided by RefSeq, Jul 2008]

GeneCards Summary for BRINP1 Gene

BRINP1 (Bone Morphogenetic Protein/Retinoic Acid Inducible Neural-Specific 1) is a Protein Coding gene. Diseases associated with BRINP1 include transitional cell carcinoma and bladder cancer, somatic. An important paralog of this gene is BRINP3.

UniProtKB/Swiss-Prot for BRINP1 Gene

  • Inhibits cell proliferation by negative regulation of the G1/S transition. Mediates cell death which is not of the classical apoptotic type and regulates expression of components of the plasminogen pathway.

Gene Wiki entry for BRINP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRINP1 Gene

Genomics for BRINP1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for BRINP1 Gene

Chromosome:
9
Start:
119,153,458 bp from pter
End:
119,369,467 bp from pter
Size:
216,010 bases
Orientation:
Minus strand

Genomic View for BRINP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BRINP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRINP1 Gene

No data available for Regulatory Elements for BRINP1 Gene

Proteins for BRINP1 Gene

  • Protein details for BRINP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60477-BRNP1_HUMAN
    Recommended name:
    BMP/retinoic acid-inducible neural-specific protein 1
    Protein Accession:
    O60477
    Secondary Accessions:
    • Q6IPV6
    • Q6P1A0
    • Q8WU22

    Protein attributes for BRINP1 Gene

    Size:
    761 amino acids
    Molecular mass:
    88760 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Silenced by methylation in 50% of bladder cancer cell lines

    Alternative splice isoforms for BRINP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BRINP1 Gene

Proteomics data for BRINP1 Gene at MOPED

Post-translational modifications for BRINP1 Gene

  • Glycosylation at Asn 156, Asn 433, Asn 443, Asn 553, Asn 599, Asn 631, and Asn 677
  • Modification sites at PhosphoSitePlus

Other Protein References for BRINP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BRINP1 Gene

Domains & Families for BRINP1 Gene

Protein Domains for BRINP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BRINP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O60477

UniProtKB/Swiss-Prot:

BRNP1_HUMAN :
  • Contains 1 MACPF domain.
  • Belongs to the BRINP family.
Domain:
  • Contains 1 MACPF domain.
Family:
  • Belongs to the BRINP family.
genes like me logo Genes that share domains with BRINP1: view

No data available for Gene Families for BRINP1 Gene

Function for BRINP1 Gene

Molecular function for BRINP1 Gene

UniProtKB/Swiss-Prot Function:
Inhibits cell proliferation by negative regulation of the G1/S transition. Mediates cell death which is not of the classical apoptotic type and regulates expression of components of the plasminogen pathway.

Gene Ontology (GO) - Molecular Function for BRINP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12442002
genes like me logo Genes that share ontologies with BRINP1: view

Phenotypes for BRINP1 Gene

GenomeRNAi human phenotypes for BRINP1:
genes like me logo Genes that share phenotypes with BRINP1: view

Animal Model Products

CRISPR Products

miRNA for BRINP1 Gene

miRTarBase miRNAs that target BRINP1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BRINP1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for BRINP1 Gene

Localization for BRINP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BRINP1 Gene

Cytoplasm.

Gene Ontology (GO) - Cellular Components for BRINP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 11420708
genes like me logo Genes that share ontologies with BRINP1: view

No data available for Subcellular locations from COMPARTMENTS for BRINP1 Gene

Pathways & Interactions for BRINP1 Gene

SuperPathways for BRINP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BRINP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007050 cell cycle arrest IEA --
GO:0008219 cell death IDA 14712213
GO:0045666 positive regulation of neuron differentiation IEA --
GO:0045786 negative regulation of cell cycle IDA 11420708
GO:0045930 negative regulation of mitotic cell cycle IEA --
genes like me logo Genes that share ontologies with BRINP1: view

No data available for Pathways by source and SIGNOR curated interactions for BRINP1 Gene

Drugs & Compounds for BRINP1 Gene

No Compound Related Data Available

Transcripts for BRINP1 Gene

mRNA/cDNA for BRINP1 Gene

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BRINP1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BRINP1 Gene

No ASD Table

Relevant External Links for BRINP1 Gene

GeneLoc Exon Structure for
BRINP1
ECgene alternative splicing isoforms for
BRINP1

Expression for BRINP1 Gene

mRNA expression in normal human tissues for BRINP1 Gene

mRNA differential expression in normal tissues according to GTEx for BRINP1 Gene

This gene is overexpressed in Brain - Cortex (x6.1), Brain - Frontal Cortex (BA9) (x5.7), Brain - Anterior cingulate cortex (BA24) (x4.3), Brain - Hippocampus (x4.3), Brain - Putamen (basal ganglia) (x4.2), Brain - Cerebellar Hemisphere (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.1).

Protein differential expression in normal tissues from HIPED for BRINP1 Gene

This gene is overexpressed in Bone marrow stromal cell (56.8) and Stomach (6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for BRINP1 Gene



mRNA Expression by UniProt/SwissProt for BRINP1 Gene

O60477-BRNP1_HUMAN
Tissue specificity: Highly expressed in brain. Weakly expressed in heart, lung, skeletal muscle, kidney, thymus, prostate, testis and small intestine.
genes like me logo Genes that share expression patterns with BRINP1: view

Protein tissue co-expression partners for BRINP1 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

Orthologs for BRINP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BRINP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BRINP1 35
  • 93.82 (n)
  • 98.82 (a)
BRINP1 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BRINP1 35
  • 94.35 (n)
  • 99.34 (a)
BRINP1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Brinp1 35
  • 92.37 (n)
  • 98.82 (a)
Dbc1 16
Brinp1 36
  • 99 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia DBC1 35
  • 99.39 (n)
  • 100 (a)
DBC1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Brinp1 35
  • 92.15 (n)
  • 98.68 (a)
oppossum
(Monodelphis domestica)
Mammalia BRINP1 36
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BRINP1 36
  • 97 (a)
OneToOne
chicken
(Gallus gallus)
Aves BRINP1 35
  • 87.12 (n)
  • 95.93 (a)
BRINP1 36
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 86 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia dbc1 35
  • 76 (n)
  • 84.94 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.32604 35
zebrafish
(Danio rerio)
Actinopterygii LOC100334375 35
  • 77.23 (n)
  • 85.32 (a)
BRINP1 36
  • 84 (a)
OneToOne
Species with no ortholog for BRINP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BRINP1 Gene

ENSEMBL:
Gene Tree for BRINP1 (if available)
TreeFam:
Gene Tree for BRINP1 (if available)

Paralogs for BRINP1 Gene

Paralogs for BRINP1 Gene

(2) SIMAP similar genes for BRINP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with BRINP1: view

Variants for BRINP1 Gene

Sequence variations from dbSNP and Humsavar for BRINP1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs17526 -- 119,272,795(-) AGTAC(A/G)GGAAA intron-variant
rs17534 -- 119,272,760(-) TCTGC(A/G)ATGTG intron-variant
rs28453 -- 119,167,297(-) TCGTC(A/G)GTGAT reference, synonymous-codon
rs123660 -- 119,178,785(-) GATCA(C/G)AAAGG intron-variant
rs170722 -- 119,175,493(-) acatg(A/T)gcaga intron-variant

Variation tolerance for BRINP1 Gene

Residual Variation Intolerance Score: 14.13% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.81; 66.97% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BRINP1 Gene

HapMap Linkage Disequilibrium report
BRINP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for BRINP1 Gene

Disorders for BRINP1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for BRINP1 Gene - From: DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
transitional cell carcinoma
  • transitional cell carcinoma of bladder
bladder cancer, somatic
  • bladder carcinoma
- elite association

Relevant External Links for BRINP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BRINP1
genes like me logo Genes that share disorders with BRINP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BRINP1 Gene

Publications for BRINP1 Gene

  1. A sequence-ready 840-kb PAC contig spanning the candidate tumor suppressor locus DBC1 on human chromosome 9q32-q33. (PMID: 10444335) Nishiyama H. … Knowles M.A. (Genomics 1999) 2 23 67
  2. Frequent silencing of DBC1 is by genetic or epigenetic mechanisms in non-small cell lung cancers. (PMID: 15746151) Izumi H. … Imoto I. (Hum. Mol. Genet. 2005) 23 67
  3. Tumorigenic heterogeneity in cancer stem cells evolved from long-term cultures of telomerase-immortalized human mesenchymal stem cells. (PMID: 15833842) Burns J.S. … Kassem M. (Cancer Res. 2005) 23 67
  4. Loss of heterozygosity at 9q33 and hypermethylation of the DBCCR1 gene in oral squamous cell carcinoma. (PMID: 15226771) Gao S. … Dabelsteen E. (Br. J. Cancer 2004) 23 67
  5. Methylation profiles of thirty four promoter-CpG islands and concordant methylation behaviours of sixteen genes that may contribute to carcinogenesis of astrocytoma. (PMID: 15367334) Yu J. … Zhu J. (BMC Cancer 2004) 23 67

Products for BRINP1 Gene

Sources for BRINP1 Gene

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