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Aliases for BRICD5 Gene

Aliases for BRICD5 Gene

  • BRICHOS Domain Containing 5 2 3
  • C16orf79 3 4
  • BRICHOS Domain-Containing Protein C16orf79 3
  • Chromosome 16 Open Reading Frame 79 2
  • BRICHOS Domain-Containing Protein 5 3

External Ids for BRICD5 Gene

Previous HGNC Symbols for BRICD5 Gene

  • C16orf79

Previous GeneCards Identifiers for BRICD5 Gene

  • GC16M002260
  • GC16M002262
  • GC16M002263

Summaries for BRICD5 Gene

GeneCards Summary for BRICD5 Gene

BRICD5 (BRICHOS Domain Containing 5) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRICD5 Gene

Genomics for BRICD5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for BRICD5 Gene

Start:
2,209,253 bp from pter
End:
2,213,540 bp from pter
Size:
4,288 bases
Orientation:
Minus strand

Genomic View for BRICD5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BRICD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRICD5 Gene

No data available for Regulatory Elements for BRICD5 Gene

Proteins for BRICD5 Gene

  • Protein details for BRICD5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PL45-BRID5_HUMAN
    Recommended name:
    BRICHOS domain-containing protein 5
    Protein Accession:
    Q6PL45
    Secondary Accessions:
    • C9J7K2
    • Q8IXU9

    Protein attributes for BRICD5 Gene

    Size:
    260 amino acids
    Molecular mass:
    28486 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BRICD5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BRICD5 Gene

Proteomics data for BRICD5 Gene at MOPED

Post-translational modifications for BRICD5 Gene

  • Glycosylation at Asn79
  • Modification sites at PhosphoSitePlus

Other Protein References for BRICD5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BRICD5 Gene

Domains for BRICD5 Gene

Gene Families for BRICD5 Gene

HGNC:
  • BRICD :BRICHOS domain containing

Protein Domains for BRICD5 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6PL45

UniProtKB/Swiss-Prot:

BRID5_HUMAN :
  • Q6PL45
Domain:
  • Contains 1 BRICHOS domain.
genes like me logo Genes that share domains with BRICD5: view

No data available for Suggested Antigen Peptide Sequences for BRICD5 Gene

Function for BRICD5 Gene

Gene Ontology (GO) - Molecular Function for BRICD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with BRICD5: view

Phenotypes for BRICD5 Gene

GenomeRNAi human phenotypes for BRICD5:
genes like me logo Genes that share phenotypes with BRICD5: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BRICD5

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BRICD5 Gene

Localization for BRICD5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BRICD5 Gene

Membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for BRICD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with BRICD5: view

No data available for Subcellular locations from COMPARTMENTS for BRICD5 Gene

Pathways for BRICD5 Gene

SuperPathways for BRICD5 Gene

No Data Available

Interacting Proteins for BRICD5 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000332389%0d%0a9606.ENSP00000316130%0d%0a
Selected Interacting proteins: ENSP00000332389 Q6PL45-BRID5_HUMAN for BRICD5 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for BRICD5 Gene

None

No data available for Pathways by source for BRICD5 Gene

Transcripts for BRICD5 Gene

mRNA/cDNA for BRICD5 Gene

(5) Selected AceView cDNA sequences:
(1) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BRICD5 Gene

BRICHOS domain containing 5:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BRICD5

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BRICD5 Gene

No ASD Table

Relevant External Links for BRICD5 Gene

GeneLoc Exon Structure for
BRICD5
ECgene alternative splicing isoforms for
BRICD5

Expression for BRICD5 Gene

mRNA expression in normal human tissues for BRICD5 Gene

mRNA differential expression in normal tissues according to GTEx for BRICD5 Gene

This gene is overexpressed in Brain - Cerebellum (6.9) and Brain - Cerebellar Hemisphere (6.1).

SOURCE GeneReport for Unigene cluster for BRICD5 Gene Hs.647399

genes like me logo Genes that share expressions with BRICD5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for BRICD5 Gene

Orthologs for BRICD5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BRICD5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BRICD5 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BRICD5 35
  • 78.15 (n)
  • 72.73 (a)
BRICD5 36
  • 62 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BRICD5 35
  • 76.74 (n)
  • 68.44 (a)
BRICD5 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bricd5 35
  • 79.41 (n)
  • 72.94 (a)
Bricd5 16
Bricd5 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BRICD5 36
  • 50 (a)
OneToOne
chicken
(Gallus gallus)
Aves BRICD5 36
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BRICD5 36
  • 35 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bricd5 35
  • 54.89 (n)
  • 47.31 (a)
zebrafish
(Danio rerio)
Actinopterygii bricd5 35
  • 53.92 (n)
  • 41.76 (a)
bricd5 36
  • 37 (a)
OneToOne
Species with no ortholog for BRICD5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BRICD5 Gene

ENSEMBL:
Gene Tree for BRICD5 (if available)
TreeFam:
Gene Tree for BRICD5 (if available)

Paralogs for BRICD5 Gene

No data available for Paralogs for BRICD5 Gene

Variants for BRICD5 Gene

Sequence variations from dbSNP and Humsavar for BRICD5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs26855 -- 2,210,934(-) GGAGG(C/T)GCAGG utr-variant-5-prime
rs26856 - 2,210,611(-) CCGTG(A/G)GCCTG reference, missense
rs26857 - 2,210,566(-) TGGGG(A/G)TTGTG missense, reference
rs160547 -- 2,211,084(-) TTCCA(C/T)GCGGC upstream-variant-2KB, utr-variant-5-prime
rs12149613 -- 2,210,055(+) CCCTG(G/T)GGAGG intron-variant

Relevant External Links for BRICD5 Gene

HapMap Linkage Disequilibrium report
BRICD5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for BRICD5 Gene

Disorders for BRICD5 Gene

No disorders were found for BRICD5 Gene.

No data available for UniProtKB/Swiss-Prot for BRICD5 Gene

Publications for BRICD5 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for BRICD5 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate BRICD5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for BRICD5
    • Block miRNA regulation of BRICD5 using miScript Target Protectors

    Sources for BRICD5 Gene

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