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Aliases for BRE-AS1 Gene

Subcategory (RNA class) for BRE-AS1 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for BRE-AS1 Gene

  • BRE Antisense RNA 1 2 3
  • BRE Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BRE-AS1 Gene

ORGUL Members for BRE-AS1 Gene

Previous GeneCards Identifiers for BRE-AS1 Gene

  • GC02M028113

Summaries for BRE-AS1 Gene

GeneCards Summary for BRE-AS1 Gene

BRE-AS1 (BRE Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRE-AS1 Gene

Genomics for BRE-AS1 Gene

Regulatory Elements for BRE-AS1 Gene

Enhancers for BRE-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F027893 0.3 FANTOM5 0.8 -2.1 -2120 0.3 BRE-AS1 LOC100420770
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BRE-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for BRE-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000300152 614 2201 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1

Genomic Location for BRE-AS1 Gene

Chromosome:
2
Start:
27,889,456 bp from pter
End:
27,891,114 bp from pter
Size:
1,659 bases
Orientation:
Minus strand

Genomic View for BRE-AS1 Gene

Genes around BRE-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BRE-AS1 Gene

Proteins for BRE-AS1 Gene

Post-translational modifications for BRE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRE-AS1 Gene

Domains & Families for BRE-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BRE-AS1 Gene

Function for BRE-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRE-AS1 Gene

Localization for BRE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BRE-AS1 Gene

Pathways & Interactions for BRE-AS1 Gene

SuperPathways for BRE-AS1 Gene

No Data Available

Interacting Proteins for BRE-AS1 Gene

Gene Ontology (GO) - Biological Process for BRE-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRE-AS1 Gene

Transcripts for BRE-AS1 Gene

mRNA/cDNA for BRE-AS1 Gene

(2) Additional mRNA sequences :

Unigene Clusters for BRE-AS1 Gene

BRE antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BRE-AS1 Gene

No ASD Table

Relevant External Links for BRE-AS1 Gene

GeneLoc Exon Structure for
BRE-AS1
ECgene alternative splicing isoforms for
BRE-AS1

Expression for BRE-AS1 Gene

SOURCE GeneReport for Unigene cluster for BRE-AS1 Gene:

Hs.729719
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BRE-AS1 Gene

Orthologs for BRE-AS1 Gene

No data available for Orthologs and Evolution for BRE-AS1 Gene

Paralogs for BRE-AS1 Gene

No data available for Paralogs for BRE-AS1 Gene

Variants for BRE-AS1 Gene

Sequence variations from dbSNP and Humsavar for BRE-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs111451240 -- 27,889,165(+) ACACA(A/G)CTTAT intron-variant, upstream-variant-2KB
rs113651030 -- 27,890,290(+) CCACT(A/G)CCACC intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs114146461 -- 27,890,466(+) CGGGT(A/C)GCCCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs116426367 -- 27,890,059(+) CCCTC(C/T)CCTGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11895255 -- 27,892,822(+) GCGGT(C/G)ATCTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BRE-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759034 CNV gain 17122850

Relevant External Links for BRE-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BRE-AS1 Gene

Disorders for BRE-AS1 Gene

Relevant External Links for BRE-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BRE-AS1

No disorders were found for BRE-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BRE-AS1 Gene

Publications for BRE-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Pan-genome isolation of low abundance transcripts using SAGE tag. (PMID: 17113583) Kim Y.C. … Wang S.M. (FEBS Lett. 2006) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for BRE-AS1 Gene

Sources for BRE-AS1 Gene

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