Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BRE Gene

protein-coding   GIFtS: 56
GCID: GC02P028025

brain and reproductive organ-expressed (TNFRSF1A modulator)

 Explore 9 diseases affiliated with
BRE via our new
 Human Malady Compendium 
Biological research products
for BRE
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Brain And Reproductive Organ-Expressed (TNFRSF1A Modulator)1 2     BRCA1/BRCA2-Containing Complex Subunit 452 3
BRCC451 2 3     BRCA1-A Complex Subunit BRE2
BRCC41 2     BRCA1/BRCA2-Containing Complex, Subunit 42
Brain And Reproductive Organ-Expressed Protein2 3     

External Ids:    HGNC: 11061   Entrez Gene: 95772   Ensembl: ENSG000001580197   OMIM: 6104975   UniProtKB: Q9NXR73   

Export aliases for BRE gene to outside databases

Previous GC identifers: GC02P028034 GC02P028206 GC02P028088 GC02P027855


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: BRE_HUMAN, Q9NXR7
Function: Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated
histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at
double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes
'Lys-63'-linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the
interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integrity and
modulating the E3 ubiquitin ligase activity of the BRCA1-BARD1 heterodimer. Probably also plays a role as a component
of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin. May play a role in
homeostasis or cellular differentiation in cells of neural, epithelial and germline origins. May also act as a death
receptor-associated anti-apoptotic protein, which inhibits the mitochondrial apoptotic pathway. May regulate TNF-alpha
signaling through its interactions with TNFRSF1A; however these effects may be indirect

Gene Wiki entry for BRE


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_022184.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the BRE gene promoter:
         Nkx2-5   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): BRE promoter sequence
   Search SABiosciences Chromatin IP Primers for BRE

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BRE


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p23.2   Ensembl cytogenetic band:  2p23.2   HGNC cytogenetic band: 2p23

BRE Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BRE gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P028025:  view genomic region     (about GC identifiers)

Start:
28,112,808 bp from pter      End:
28,561,768 bp from pter
Size:
448,961 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: BRE_HUMAN, Q9NXR7 (See protein sequence)
Recommended Name: BRCA1-A complex subunit BRE  
Size: 383 amino acids; 43552 Da
Subunit: Component of the BRCA1-A complex, at least composed of the BRCA1, BARD1, UIMC1/RAP80, FAM175A/Abraxas,
BRCC3/BRCC36, BRE/BRCC45 and BABAM1/NBA1. In the BRCA1-A complex, interacts directly with FAM175A/Abraxas,
BRCC3/BRCC36 and BABAM1/NBA1. Binds polyubiquitin. Component of the BRISC complex, at least composed of the
FAM175B/ABRO1, BRCC3/BRCC36, BRE/BRCC45 and BABAM1/NBA1. Component of the BRCA1/BRCA2 containing complex (BRCC), which
also contains BRCA1, BRCA2, BARD1, BRCC3/BRCC36 and RAD51. BRCC is a ubiquitin E3 ligase complex that enhances
cellular survival following DNA damage. May interact with FAS and TNFRSF1A
Subcellular location: Cytoplasm. Nucleus. Note=Localizes at sites of DNA damage at double-strand breaks (DSBs)
Secondary accessions: A8K4X1 D6W562 D6W563 Q13880 Q4ZFX8 Q53SD0 Q969X9 Q96P06
Alternative splicing: 4 isoforms:  Q9NXR7-2   Q9NXR7-1   Q9NXR7-3   Q9NXR7-4   

Explore the universe of human proteins at neXtProt for BRE: NX_Q9NXR7

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NXR7

  • BRE Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (6 alternative transcripts): 
    NP_001248769.1  NP_004890.2  NP_954661.1  NP_954662.1  NP_954663.1  NP_954664.1  

    ENSEMBL proteins: 
     ENSP00000392345   ENSP00000343412   ENSP00000368945   ENSP00000339371   ENSP00000368953  
     ENSP00000354699   ENSP00000368950  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 3): BRE
    OriGene Custom Protein Services for BRE 
    GenScript Custom Purified and Recombinant Proteins Services for BRE
    Novus Biologicals BRE Proteins
    Novus Biologicals BRE Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for BRE

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000152nuclear ubiquitin ligase complex IDA14636569
    GO:0005634nucleus IDA19261748
    GO:0005737cytoplasm IDA--
    GO:0070531BRCA1-A complex IDA19261746
    GO:0070552BRISC complex IDA19214193


    BRE for ontologies           About GeneDecksing



    BRE Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies (see all 3): BRE
    OriGene Custom Antibody Services for BRE 
    GenScript Superior Antibodies for BRE
    Novus Biologicals BRE Antibodies
    Abcam antibodies for BRE 
    Uscn Antibodies for BRE
    ThermoFisher Antibody for BRE

    Assay Products for BRE: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for BRE
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for BRE


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    BRE for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR010358 Brain/reproduct-express_prot

    Graphical View of Domain Structure for InterPro Entry Q9NXR7

    ProtoNet protein and cluster: Q9NXR7

    UniProtKB/Swiss-Prot: BRE_HUMAN, Q9NXR7
    Domain: Contains 2 ubiquitin-conjugating enzyme family-like (UEV-like) regions. These regions lack the critical Cys
    residues required for ubiquitination but retain the ability to bind ubiquitin
    Similarity: Belongs to the BRE family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: BRE_HUMAN, Q9NXR7
    Function: Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated
    histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at
    double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes
    'Lys-63'-linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it acts as an adapter that bridges the
    interaction between BABAM1/NBA1 and the rest of the complex, thereby being required for the complex integrity and
    modulating the E3 ubiquitin ligase activity of the BRCA1-BARD1 heterodimer. Probably also plays a role as a component
    of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked ubiquitin. May play a role in
    homeostasis or cellular differentiation in cells of neural, epithelial and germline origins. May also act as a death
    receptor-associated anti-apoptotic protein, which inhibits the mitochondrial apoptotic pathway. May regulate TNF-alpha
    signaling through its interactions with TNFRSF1A; however these effects may be indirect
    Induction: Down-regulated by DNA-damaging agents in fibroblasts, by retinoic acid in brain glioma U-251MG and
    promyelocytic HL-60 cell lines, and by bacterial lipopolysaccharides (LPS) in peripheral blood mononuclear cells
    (PBMC)

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 5): BRE
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat BRE
    8 QIAGEN miScript miRNA Assays for microRNAs that regulate BRE:
    hsa-miR-4306 hsa-miR-3138 hsa-miR-3605-5p hsa-miR-1270 hsa-miR-620 hsa-miR-2115 hsa-miR-185 hsa-miR-628-5p
    SwitchGear 3'UTR luciferase reporter plasmidBRE 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for BRE (see all 7)
    OriGene shRNA RFP: BRE
    OriGene siRNA: BRE
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BRE

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for BRE

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BRE (see all 11)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BRE (see all 6)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: BRE (NM_004961)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for BRE
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BRE 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for BRE
    Search LifeMap BioReagents cell lines for BRE

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRE

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000268peroxisome targeting sequence binding TAS11676476
    GO:0005164tumor necrosis factor receptor binding IDA15465831
    GO:0005515protein binding IPI19615732
    GO:0031593polyubiquitin binding IDA19261749


    BRE for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for BRE:
     Increased cell death HMECs cel 

    Animal Models:
         5 MGI mutant phenotypes (inferred from 1 allele(MGI details for Bre):
     behavior/neurological  cardiovascular system  homeostasis/metabolism  other  skeleton 

    BRE for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Apoptosis and survival_Caspase cascade
    Apoptosis and survival_FAS signaling cascades0.44
    Apoptosis and survival FAS signaling cascades0.44
    2TWEAK Pathway
    Apoptosis and survival_TNFR1 signaling pathway0.40
    Apoptosis and survival TNFR1 signaling pathway0.40

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 EMD Millipore Pathways for BRE
        Apoptosis and survival TNFR1 signaling pathway
    Apoptosis and survival FAS signaling cascades


    2 GeneGo (Thomson Reuters) Pathways for BRE
        Apoptosis and survival FAS signaling cascades
    Apoptosis and survival TNFR1 signaling pathway



    BRE for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for BRE

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/59 Interacting proteins for BRE (Q9NXR71, 2, 3 ENSP000003434124) via UniProtKB, MINT, STRING, and/or I2D (see all 59)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    BABAM1Q9NWV81, 3, ENSP000003524084EBI-949389,EBI-745725 I2D: score=5 STRING: ENSP00000352408
    GFI1BQ5VTD92, 3, ENSP000003447824MINT-2867054 I2D: score=4 STRING: ENSP00000344782
    DHRS7BQ6IAN03, ENSP000003788874I2D: score=2 STRING: ENSP00000378887
    FAM175AQ6UWZ73, ENSP000003698574I2D: score=2 STRING: ENSP00000369857
    FASP254453, ENSP000003479794I2D: score=2 STRING: ENSP00000347979
    About this table

    Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006302double-strand break repair IMP19261748
    GO:0006915apoptotic process IEA--
    GO:0006974response to DNA damage stimulus IEP7826398
    GO:0007165signal transduction TAS9737713
    GO:0010212response to ionizing radiation IMP19261749


    BRE for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for BRE
    Search CenterWatch for drugs/clinical trials and news about BRE 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for BRE gene (6 alternative transcripts): 
    NM_001261840.1  NM_004899.4  NM_199191.2  NM_199192.2  NM_199193.2  NM_199194.2  

    Unigene Cluster for BRE:

    Brain and reproductive organ-expressed (TNFRSF1A modulator)
    Hs.258314  [show with all ESTs]
    Unigene Representative Sequence: NM_004899
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000436924 ENST00000344773(uc002rlp.1 uc002rls.3 uc002rlu.3)
    ENST00000379624(uc002rlv.3) ENST00000492702 ENST00000496951 ENST00000342045(uc002rlr.3)
    ENST00000379632(uc002rlq.3) ENST00000361704(uc002rlt.3) ENST00000379629


    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 5): BRE
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat BRE
    8 QIAGEN miScript miRNA Assays for microRNAs that regulate BRE:
    hsa-miR-4306 hsa-miR-3138 hsa-miR-3605-5p hsa-miR-1270 hsa-miR-620 hsa-miR-2115 hsa-miR-185 hsa-miR-628-5p
    SwitchGear 3'UTR luciferase reporter plasmidBRE 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for BRE (see all 7)
    OriGene shRNA RFP: BRE
    OriGene siRNA: BRE
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BRE
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BRE (see all 11)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BRE (see all 6)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: BRE (NM_004961)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for BRE
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BRE 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BRE
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat BRE
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BRE
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BRE

    Additional cDNA sequence: 

    AF015767.1 AF420602.1 AF420603.1 AF420604.1 AF420605.1 AK000097.1 AK098345.1 AK123076.1 
    AK291086.1 AY438031.1 BC001251.1 L38616.1 

    24/25 DOTS entries (see all 25):

    DT.101984934  DT.92446387  DT.95146598  DT.91702346  DT.86855482  DT.92446391  DT.100884657  DT.100884638 
    DT.100884642  DT.100884659  DT.454839  DT.95146595  DT.100884660  DT.92446385  DT.100884661  DT.121024320 
    DT.92446388  DT.121024326  DT.92446378  DT.121024164  DT.121024165  DT.121024210  DT.417608  DT.95146574 

    24/90 AceView cDNA sequences (see all 90):

    BC014088 BM717190 BE221723 AI452781 BQ016020 CD671167 AA860865 CR609030 
    AI912209 NM_022128 CA434266 AJ404857 BE501861 BE218181 H82519 BG201691 
    AA505744 AA393609 AL541410 BM833322 CD515982 AI266440 AI343781 BU621759 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for BRE (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b
    SP1:                                      -                                                                           
    SP2:                                                                                                                  
    SP3:                    -     -                                                                                       
    SP4:                                                                                            -                     
    SP5:                                                                                                                  


    ECgene alternative splicing isoforms for BRE

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    BRE expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CGTGTCAGCA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See BRE Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for BRE

    SOURCE GeneReport for Unigene cluster: Hs.258314

    UniProtKB/Swiss-Prot: BRE_HUMAN, Q9NXR7
    Tissue specificity: Expressed in all cell lines examined. Highly expressed in placenta

        SABiosciences Expression via Pathway-Focused PCR Arrays including BRE: 
              Apoptosis 384HT in human mouse rat
              Ubiquitin Ligases in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BRE
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat BRE
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BRE
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BRE
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRE

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for BRE gene from 8/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Bre1 , 5 brain and reproductive organ-expressed protein1, 5 90.25(n)1
    99.22(a)1
      5 (17.27 cM)5
    1079761  NM_144541.11  NP_653124.11 
     316976845 
    chicken
    (Gallus gallus)
    Aves BRE1 brain and reproductive organ-expressed (TNFRSF1A modulator) 82.51(n)
    97.65(a)
      421417  NM_001008458.1  NP_001008458.1 
    lizard
    (Anolis carolinensis)
    Reptilia BRE6
    --
    96(a)
    1 ↔ 1
    2(125548719-125700940)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.69072 Xenopus laevis transcribed sequence with moderate similarity more 78.67(n)    BX851153.1 
    zebrafish
    (Danio rerio)
    Actinopterygii 570366022   -- 79.92(n)    57036602 
    honey bee
    (Apis mellifera)
    Insecta --
    --
    34(a)
    1 ↔ 1
    GroupUn.145(4205-5597)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT5G424701 BRCA1-A complex subunit BRE 43.63(n)
    31.94(a)
      834254  NM_123612.3  NP_199062.2 
    rice
    (Oryza sativa)
    Liliopsida Os06g07156001 hypothetical protein 43.99(n)
    32.59(a)
      4342073  NM_001065121.1  NP_001058586.1 


    ENSEMBL Gene Tree for BRE (if available)
    TreeFam Gene Tree for BRE (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/6696 NCBI SNPs in BRE are shown (see all 6696    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1430076601,2
    --28111553(+) TAAACA/GCAGTA 7 -- us2k1 int10--------
    rs112987021,2
    C,--28111657(+) TTGTTA/-AAAAA 7 -- int1 us2k12Minor allele frequency- -:0.25NA CSA 4
    rs1511398041,2
    --28111731(+) GAAAAA/GTTTAC 7 -- int1 us2k10--------
    rs1140478201,2
    F,--28111751(+) CTCTAG/AAAAAA 7 -- int1 us2k11Minor allele frequency- A:0.03WA 118
    rs1406331781,2
    --28111767(+) ACAGGC/TCTCTT 7 -- int1 us2k10--------
    rs13875731,2
    C,F,O,H,--28111905(-) TGCATA/GAGCTT 1 -- ds500119Minor allele frequency- G:0.16NS EA NA WA CSA 2032
    rs1504827511,2
    --28111921(+) TTCTCA/GTTACA 8 -- int1 us2k10--------
    rs795261871,2
    --28112056(+) TGAAGG/AAGTCC 1 -- ds50011Minor allele frequency- A:0.01NA 120
    rs1823100711,2
    --28112208(+) CAGGAC/TGAATG 8 -- int1 us2k10--------
    rs1888898911,2
    --28112338(+) TGAATG/TTATTA 8 -- int1 nc-transcript-variantus2k10--------

    HapMap Linkage Disequilibrium report for BRE (28112808 - 28362808 bp, first 250kb of BRE)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 10 variations for BRE
         5 CNVs: 3347 58978 50457 97797 7263
         5 Indels: 45992 43054 40316 60290 12062

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BRE
    DNA2.0 Custom Variant and Variant Library Synthesis for BRE

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    BRE for disorders           About GeneDecksing

    OMIM gene information: 610497    OMIM disorders: --

    9 diseases for BRE:    About MalaCards
    acute myeloid leukemia    myeloid leukemia    brain glioma    esophageal carcinoma
    hepatocellular carcinoma    esophagitis    leukemia    ataxia
    carcinoma

    Human Genome Epidemiology (HuGE) Navigator: BRE (2 documents)

    Export disorders for BRE gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for BRE gene, integrated from 9 sources (see all 49):
    (articles sorted by number of sources associating them with BRE)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of a brain- and reproductive-organs-specific gene responsive to DNA damage and retinoic acid. (PubMed id 7826398)1, 2, 3 Li L.... Chan J.Y.-H. (1995)
    2. A death receptor-associated anti-apoptotic protein, BRE, inhibits mitochondrial apoptotic pathway. (PubMed id 15465831)1, 2, 9 Li Q.... Chui Y.-L. (2004)
    3. MERIT40 facilitates BRCA1 localization and DNA damage repair. (PubMed id 19261748)1, 2 Feng L.... Chen J. (2009)
    4. MERIT40 controls BRCA1-Rap80 complex integrity and recruitment to DNA double-strand breaks. (PubMed id 19261746)1, 2 Shao G.... Greenberg R.A. (2009)
    5. NBA1, a new player in the Brca1 A complex, is required for DNA damage resistance and checkpoint control. (PubMed id 19261749)1, 2 Wang B.... Elledge S.J. (2009)
    6. K63-specific deubiquitination by two JAMM/MPN+ complexes: BRISC- associated Brcc36 and proteasomal Poh1. (PubMed id 19214193)1, 2 Cooper E.M....Cohen R.E. (2009)
    7. RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites. (PubMed id 17525341)1, 2 Sobhian B.... Greenberg R.A. (2007)
    8. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    10. Regulation of BRCC, a holoenzyme complex containing BRCA1 and BRCA2, by a signalosome-like subunit and its role in DNA repair. (PubMed id 14636569)1, 2 Dong Y.... Shiekhattar R. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9577 HGNC: 1106 AceView: RBKS Ensembl:ENSG00000158019 euGenes: HUgn9577
    ECgene: BRE H-InvDB: BRE

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for BRE Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for BRE Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for BRE gene:
    Search GeneIP for patents involving BRE

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for BRE   OriGene shRNA RFP for BRE  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for BRE   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BRE  
     OriGene Protein Over-expression Lysate for BRE   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for BRE   OriGene 3'-UTR Clone for BRE  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BRE   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BRE  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for BRE   OriGene Custom Protein Services for BRE  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat BRE
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BRE
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BRE
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BRE
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BRE
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BRE
     GenScript Custom Purified and Recombinant Proteins Services for BRE GenScript cDNA clones with any tag delivered in your preferred vector for BRE
     GenScript Custom Assay Services for BRE GenScript Superior Antibodies for BRE
     GenScript Custom overexpressing Cell Line Services for BRE CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in BRE promoter
     Search Chromatin IP Primers for BRE
     RT2 qPCR Primer Assay in human, mouse, rat BRE
     GNC Network for BRE
     SABiosciences PCR Arrays including human, mouse, rat BRE
     Search Tocris compounds for BRE
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     BRE antibodies
     BRE proteins
     BRE lysates
     Antibodies for BRE
     See all of Abcam's Antibodies, Kits and Proteins for BRE
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     BRE Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for BRE
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRE
     SwitchGear 3'UTR luciferase reporter plasmids for BRE
     SwitchGear Promoter luciferase reporter plasmids for BRE
     ThermoFisher Antibody for BRE
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BRE
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      BRE gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4