Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BRD2-IT1 Gene

Subcategory (RNA class) for BRD2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BRD2-IT1 Gene

  • BRD2 Intronic Transcript 1 2 3 5
  • BRD2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for BRD2-IT1 Gene

Previous GeneCards Identifiers for BRD2-IT1 Gene

  • GC00U933599
  • GC06P032940
  • GC06P032941
  • GC06P032946

Summaries for BRD2-IT1 Gene

GeneCards Summary for BRD2-IT1 Gene

BRD2-IT1 (BRD2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BRD2-IT1 Gene

Genomics for BRD2-IT1 Gene

Regulatory Elements for BRD2-IT1 Gene

Enhancers for BRD2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F032940 1.4 FANTOM5 ENCODE 12.5 -26.0 -26036 8.8 HDGF ATF1 WRNIP1 SIN3A ARID4B BRCA1 ZNF2 YY1 ZNF143 ZNF207 HLA-DMA BRD2 PSMB9 TAP1 TAP2 HLA-DMB BRD2-IT1 HLA-DPA1 ENSG00000250264 MIR6873
GH06F032965 1.2 ENCODE 0.8 +0.4 437 10.4 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 NFYC BRD2 VPS52 ATF6B LEMD2 RING1 RXRB DAXX MIR6873 HCG25 PPT2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BRD2-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for BRD2-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000488074 968 7601 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3

Genomic Location for BRD2-IT1 Gene

Chromosome:
6
Start:
32,970,232 bp from pter
End:
32,970,886 bp from pter
Size:
655 bases
Orientation:
Plus strand

Genomic View for BRD2-IT1 Gene

Genes around BRD2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BRD2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BRD2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BRD2-IT1 Gene

Proteins for BRD2-IT1 Gene

Post-translational modifications for BRD2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BRD2-IT1 Gene

Domains & Families for BRD2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BRD2-IT1 Gene

Function for BRD2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BRD2-IT1 Gene

Localization for BRD2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BRD2-IT1 Gene

Pathways & Interactions for BRD2-IT1 Gene

SuperPathways for BRD2-IT1 Gene

No Data Available

Interacting Proteins for BRD2-IT1 Gene

Gene Ontology (GO) - Biological Process for BRD2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BRD2-IT1 Gene

Transcripts for BRD2-IT1 Gene

mRNA/cDNA for BRD2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BRD2-IT1 Gene

No ASD Table

Relevant External Links for BRD2-IT1 Gene

GeneLoc Exon Structure for
BRD2-IT1
ECgene alternative splicing isoforms for
BRD2-IT1

Expression for BRD2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BRD2-IT1 Gene

genes like me logo Genes that share expression patterns with BRD2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BRD2-IT1 Gene

Orthologs for BRD2-IT1 Gene

Evolution for BRD2-IT1 Gene

ENSEMBL:
Gene Tree for BRD2-IT1 (if available)
TreeFam:
Gene Tree for BRD2-IT1 (if available)

No data available for Orthologs for BRD2-IT1 Gene

Paralogs for BRD2-IT1 Gene

No data available for Paralogs for BRD2-IT1 Gene

Variants for BRD2-IT1 Gene

Relevant External Links for BRD2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BRD2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BRD2-IT1 Gene

Disorders for BRD2-IT1 Gene

No disorders were found for BRD2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BRD2-IT1 Gene

Publications for BRD2-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for BRD2-IT1 Gene

Sources for BRD2-IT1 Gene

Content
Loading form....