BRAT1 Gene
protein-coding GIFtS : 47
GCID: GC07 M002577
BRCA1-associated ATM activator 1 (Previous name: chromosome 7 open reading frame 27 ) (Previous symbols: C7orf27, BAAT1 )
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Aliasesfor BRAT1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases BRCA1-Associated ATM Activator 1 1 2 MGC229161 BAAT11 2 3 Chromosome 7 Open Reading Frame 271 C7orf271 2 3 RMFSL2 BRCA1-Associated Protein Required For ATM Activation Protein 12 3 HEAT Repeat-Containing Protein C7orf272
Export aliases for BRAT1 gene to outside databases
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Summariesfor BRAT1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for BRAT1 : The protein encoded by this ubiquitously expressed gene interacts with the tumor suppressing BRCA1 (breast cancer 1) protein and and the ATM (ataxia telangiectasia mutated) protein. ATM is thought to be a master controller of cell cycle checkpoint signalling pathways that are required for cellular responses to DNA damage such as double-strand breaks that are induced by ionizing radiation and complexes with BRCA1 in the multi-protein complex BASC (BRAC1-associated genome surveillance complex). The protein encoded by this gene is thought to play a role in the DNA damage pathway regulated by BRCA1 and ATM. (provided by RefSeq, Mar 2012) UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6 Function : Required for activation of ATM following ionizing radiation. May act by regulating dephosphorylation of ATM
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Genomic Viewsfor BRAT1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2 Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for BRAT1 Other transcription factors Search SABiosciences Chromatin IP Primers for BRAT1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BRAT1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p22.3 Ensembl cytogenetic band: 7p22.3 HGNC cytogenetic band: 7p22.3 BRAT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M002577: view genomic region
(about GC identifiers )
Start:
2,577,511 bp from pter
End:
2,595,361 bp from pter
Size:
17,851 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 2,625,380-2,643,058
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Proteinsfor BRAT1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6 (See
protein sequence )Recommended Name: BRCA1-associated ATM activator 1 Size : 821 amino acids; 88119 Da
Subunit : Interacts with BRCA1 and ATM
Subcellular location : Nucleus. Note=Present at double strand breaks (DSBs) following ionizing radiation treatment
Sequence caution : Sequence=BAB15772.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions : A4D200 C9JY24 Q8IW85 Q8IZ43 Q8WVR8 Q96IV9 Q9H7J8 Q9UFA3Alternative splicing : 3 isoforms : Q6PJG6-1 Q6PJG6-2 Q6PJG6-3 (No experimental confirmation available. Ref.5 (AAH40704) sequence is in conflict in position: 49:P->T)Explore the universe of human proteins at neXtProt for BRAT1: NX_Q6PJG6 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6PJG6 BRAT1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_689956.2 ENSEMBL proteins: ENSP00000339637 ENSP00000409209 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
BRAT1 for ontologies About GeneDecksing BRAT1 Antibody Products: Assay Products for BRAT1:
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Protein
Domains / Familiesfor BRAT1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
BRAT1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6PJG6 ProtoNet protein and cluster: Q6PJG6
UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6 Similarity : Contains 2 HEAT repeats
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Functionfor BRAT1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6 Function : Required for activation of ATM following ionizing radiation. May act by regulating dephosphorylation of ATM
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BRAT1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BRAT1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BRAT1 (NM_152743 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BRAT1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BRAT1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRAT1
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
BRAT1 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for BRAT1 :
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Pathways & Interactionsfor BRAT1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BRAT1 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for BRAT1 (Q6PJG6 3 ENSP00000339637 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0010212 response to ionizing radiation
IMP 16452482
BRAT1 for ontologies About GeneDecksing
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Drugs & Compoundsfor BRAT1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for BRAT1 Search CenterWatch for drugs/clinical trials and news about BRAT1
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Transcriptsfor BRAT1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for BRAT1 gene: NM_152743.3 Unigene Cluster for BRAT1:
BRCA1-associated ATM activator 1 Hs.520623 [show with all ESTs ] Unigene Representative Sequence: NM_152743 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000340611 (uc003smi.3 ) ENST00000493232 ENST00000467558 ENST00000469750 (uc003smh.4 uc003smj.2 )ENST00000473879 ENST00000421712 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BRAT1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BRAT1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BRAT1 (NM_152743 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BRAT1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BRAT1
Additional cDNA sequence: AL133088.1 BC007209.1 BC015632.2 BC023561.2
9 DOTS entries : DT.91746684 DT.95319778
DT.95319768 DT.95319767 DT.101983036 DT.100791018 DT.100791016 DT.121111633 DT.97859408 24/208 AceView cDNA sequences (see all 208 ):
BU731056 BM931086 AI394324 BC007209 BX284041 AA078181 BQ427534 BM675122 BU556454 BC015632 BE303038 CR604410 NM_152743 BC023561 BE043101 BM694411 AW005320 AL525642 BI335238 BQ045151 AI275736 BM825687 BQ026094 CB216768 GeneLoc Exon Structure 5/13 Alternative Splicing Database (ASD) splice patterns (SP) for BRAT1 (see all 13 ) About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b ^ 14 ^ SP1 :         -   -                         -       -           -   SP2 :         -   -                         -       -             SP3 :                                         -             SP4 :                             -   -     -       -             SP5 :                                   -                  
ExUns: 15 ^ 16 ^ 17 ^ 18a · 18b SP1 :           SP2 :           SP3 :           SP4 :           SP5 :          
ECgene alternative splicing isoforms for BRAT1
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Expression for BRAT1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section BRAT1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TCCTTCTGTG
About this image See BRAT1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for BRAT1 SOURCE GeneReport for Unigene cluster: Hs.520623 UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6 Tissue specificity : Ubiquitously expressed SABiosciences Custom PCR Arrays for BRAT1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BRAT1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat BRAT1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BRAT1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BRAT1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRAT1
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Orthologsfor BRAT1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for BRAT1 gene from 5/14 species (see all 14 ) About this table
ENSEMBL Gene Tree for BRAT1 (if available)TreeFam Gene Tree for BRAT1 (if available)
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Paralogsfor BRAT1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor BRAT1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More