Home
GeneCards Guide
Suite
- MalaCards
- GeneALaCart
- GeneDecks
- GeneIP
- GeneLoc
Terms and Conditions
- Terms of Use
- 3rd Party Notice
About Us
- GeneCards Team
- Our Publications
- Citing GeneCards
- Licensing Agreement
- Weizmann Institute
- LifeMap Sciences Inc
User Feedback
Mirror sites

Set Analyses:

Generates a file of GeneCards annotations for your list of genes

Advanced Search

Search By

Section (entire)

for

All GeneCards Within gene subset (to enable gene prioritization):
or upload a file of gene symbols

Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

BRAT1 Gene

protein-coding GIFtS: 49
GCID: GC07M002577

BRCA1-Associated ATM Activator 1

(Previous name: chromosome 7 open reading frame 27)
(Previous symbols: C7orf27, BAAT1)

4 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
BRCA1-Associated ATM Activator 1¹ ²		Chromosome 7 Open Reading Frame 27¹
BAAT1¹ ² ³		RMFSL²
C7orf27¹ ² ³		HEAT Repeat-Containing Protein C7orf27²
BRCA1-Associated Protein Required For ATM Activation Protein 1¹ ² ³

External Ids:	HGNC: 21701¹	Entrez Gene: 221927²	Ensembl: ENSG00000106009⁷	OMIM: 614506⁵	UniProtKB: Q6PJG6³

Export aliases for BRAT1 gene to outside databases

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for BRAT1 Gene:

The protein encoded by this ubiquitously expressed gene interacts with the tumor suppressing BRCA1 (breast cancer 1)

protein and and the ATM (ataxia telangiectasia mutated) protein. ATM is thought to be a master controller of cell

cycle checkpoint signalling pathways that are required for cellular responses to DNA damage such as double-strand

breaks that are induced by ionizing radiation and complexes with BRCA1 in the multi-protein complex BASC

(BRAC1-associated genome surveillance complex). The protein encoded by this gene is thought to play a role in the DNA

damage pathway regulated by BRCA1 and ATM. (provided by RefSeq, Mar 2012)

GeneCards Summary for BRAT1 Gene:

BRAT1 (BRCA1-associated ATM activator 1) is a protein-coding gene. Diseases associated with BRAT1 include ataxia telangiectasia, and dysautonomia. GO annotations related to this gene include protein binding.

UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6

Function: Required for activation of ATM following ionizing radiation. May act by regulating dephosphorylation of ATM

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000007.13 NT_007819.17 NC_018918.2 NT_079592.2

Regulatory elements:

Search SABiosciences Regulatory transcription factor binding sites for BRAT1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): BRAT1 promoter sequence

Search SABiosciences Chromatin IP Primers for BRAT1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BRAT1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p22.3 Ensembl cytogenetic band: 7p22.3 HGNC cytogenetic band: 7p22.3

BRAT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BRAT1 gene location

GeneLoc information about chromosome 7 GeneLoc Exon Structure

GeneLoc location for GC07M002577: view genomic region (about GC identifiers)

Start:	2,577,444 bp from pter	End:	2,595,392 bp from pter
Size:	17,949 bases	Orientation:	minus strand

1 alternative location:

Chr7-,CRA_TCAG 2,625,313-2,643,304

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6 (See protein sequence)

Recommended Name: BRCA1-associated ATM activator 1

Size: 821 amino acids; 88119 Da

Subunit: Interacts with BRCA1 and ATM

Subcellular location: Nucleus. Note=Present at double strand breaks (DSBs) following ionizing radiation treatment

Sequence caution: Sequence=BAB15772.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

Secondary accessions: A4D200 C9JY24 Q8IW85 Q8IZ43 Q8WVR8 Q96IV9 Q9H7J8 Q9UFA3

Alternative splicing: 3 isoforms: Q6PJG6-1 Q6PJG6-2 Q6PJG6-3 (No experimental confirmation available. Ref.5 (AAH40704) sequence is in conflict in position: 49:P->T)

Explore the universe of human proteins at neXtProt for BRAT1: NX_Q6PJG6

Explore proteomics data for BRAT1 at MOPED

Post-translational modifications:

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_Q6PJG6

BRAT1 Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins: NP_689956.2

ENSEMBL proteins:

ENSP00000339637 ENSP00000409209

Human Recombinant Protein Products for BRAT1:

	Browse Purified and Recombinant Proteins at EMD Millipore
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	OriGene Purified Protein for BRAT1 OriGene Protein Over-expression Lysate for BRAT1 OriGene MassSpec for BRAT1 OriGene Custom Protein Services for BRAT1
	GenScript Custom Purified and Recombinant Proteins Services for BRAT1
	Novus Biologicals BRAT1 Protein Novus Biologicals BRAT1 Lysates
	Browse Sino Biological Recombinant Proteins Browse Sino Biological Cell Lysates
	Browse ProSpec Recombinant Proteins
	Cloud-Clone Corp. Proteins for BRAT1

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	16452482

BRAT1 for ontologies About GeneDecksing

BRAT1 Antibody Products:

	Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse R&D Systems for Antibodies
	Browse OriGene Antibodies OriGene Custom Antibody Services for BRAT1
	GenScript Custom Superior Antibodies Services for BRAT1
	Novus Biologicals BRAT1 Antibodies
	Abcam antibodies for BRAT1
	Cloud-Clone Corp. Antibodies for BRAT1
	ThermoFisher Antibodies for BRAT1
	LSBio Antibodies in human, mouse, rat for BRAT1

Assay Products for BRAT1:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Assay Services for BRAT1
	Browse R&D Systems for biochemical assays
	GenScript Custom Assay Services for BRAT1
	Browse Enzo Life Sciences for kits & assays
	Cloud-Clone Corp. ELISAs for BRAT1 Cloud-Clone Corp. CLIAs for BRAT1

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

3 InterPro protein domains:

IPR000357 HEAT

IPR011989 ARM-like

IPR016024 ARM-type_fold

Graphical View of Domain Structure for InterPro Entry Q6PJG6

ProtoNet protein and cluster: Q6PJG6

UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6

Similarity: Contains 2 HEAT repeats

BRAT1 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: BRAT1_HUMAN, Q6PJG6

Function: Required for activation of ATM following ionizing radiation. May act by regulating dephosphorylation of ATM

Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005488	binding	--	--
GO:0005515	protein binding	IPI	16452482

BRAT1 for ontologies About GeneDecksing

Phenotypes:
1 GenomeRNAi human phenotype for BRAT1:

Increased gamma-H2AX phosphory

Animal Models:

inGenious Targeting Laboratory - Custom generated mouse model solutions for BRAT1

inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for BRAT1

miRNA Products:
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat BRAT1
		Search QIAGEN for miScript miRNA Assays for microRNAs that regulate BRAT1
		SwitchGear 3'UTR luciferase reporter plasmid: BRAT1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene RNAi products in human, mouse, rat for BRAT1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BRAT1
		Sirion Biotech Custom design and validation of potent shRNA sequences against BRAT1

Gene Editing Products:			DNA2.0 Custom Protein Engineering Service for BRAT1
			Sirion Biotech Customized adenovirus for overexpression of BRAT1 Customized adenovirus for potent knockdown of BRAT1

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene clones in human, mouse for BRAT1 (see all 7) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: BRAT1 (NM_152743)
		Browse Sino Biological Human cDNA Clones
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for BRAT1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BRAT1

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for BRAT1
		Search LifeMap BioReagents cell lines for BRAT1
		Sirion Biotech Customized stable knockdown cell line services for BRAT1 Customized inducible knockdown cell line services for BRAT1 Customized stable overexpressing cell line services for BRAT1 Customized inducible overexpressing cell line services for BRAT1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRAT1

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for BRAT1

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for BRAT1 (Q6PJG6³ ENSP00000339637⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
UBC	P0CG48³, ENSP00000344818⁴	I2D: score=1 STRING: ENSP00000344818
SUMO2	ENSP00000405965⁴	STRING: ENSP00000405965

About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0010212	response to ionizing radiation	IMP	16452482

BRAT1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for BRAT1

Search CenterWatch for drugs/clinical trials and news about BRAT1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for BRAT1 gene:

NM_152743.3

Unigene Cluster for BRAT1:

BRCA1-associated ATM activator 1

Hs.520623 [show with all ESTs]

Unigene Representative Sequence: NM_152743

6 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000340611(uc003smi.3) ENST00000493232 ENST00000467558 ENST00000469750(uc003smh.4 uc003smj.2)

ENST00000473879 ENST00000421712

miRNA Products:
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat BRAT1
		Search QIAGEN for miScript miRNA Assays for microRNAs that regulate BRAT1
		SwitchGear 3'UTR luciferase reporter plasmid: BRAT1 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene RNAi products in human, mouse, rat for BRAT1
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BRAT1
		Sirion Biotech Custom design and validation of potent shRNA sequences against BRAT1

Clone Products:		OriGene clones in human, mouse for BRAT1 (see all 7) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector: BRAT1 (NM_152743)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for BRAT1
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BRAT1

Primer Products:		OriGene qPCR primer pairs and template standards for BRAT1 OriGene qSTAR qPCR primer pairs in human, mouse for BRAT1
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat BRAT1
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BRAT1
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BRAT1

Additional mRNA sequence:

AL133088.1 BC007209.1 BC015632.2 BC023561.2

9 DOTS entries:

DT.91746684 DT.95319778 DT.95319768 DT.95319767 DT.101983036 DT.100791018 DT.100791016 DT.121111633

DT.97859408

24/208 AceView cDNA sequences (see all 208):

BM825687 BX284041 BU556454 NM_152743 BE043102 BM931086 BQ427534 AI394324

BU731056 BE303038 BE247601 BC007209 BI335238 AW005320 BM916568 BF726952

AA112910 AI275736 BQ951743 AA078181 BC023561 BE043101 BQ045151 BQ026094

GeneLoc Exon Structure

5/13 Alternative Splicing Database (ASD) splice patterns (SP) for BRAT1 (see all 13) About this scheme

ExUns:	1a	·	1b	·	1c	^	2	^	3	^	4	^	5	^	6	^	7a	·	7b	·	7c	·	7d	·	7e	^	8a	·	8b	·	8c	^	9	^	10a	·	10b	^	11	^	12a	·	12b	·	12c	^	13a	·	13b	^	14	^
SP1:									-		-																								-						-										-
SP2:									-		-																								-						-
SP3:																																									-
SP4:																													-		-				-						-
SP5:																																			-

ExUns:	15	^	16	^	17	^	18a	·	18b
SP1:
SP2:
SP3:
SP4:
SP5:

ECgene alternative splicing isoforms for BRAT1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

BRAT1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: TCCTTCTGTG

About this image

See BRAT1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for BRAT1

SOURCE GeneReport for Unigene cluster: Hs.520623

UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6

Tissue specificity: Ubiquitously expressed

SABiosciences Custom PCR Arrays for BRAT1

Primer Products:		OriGene qPCR primer pairs and template standards for BRAT1 OriGene qSTAR qPCR primer pairs in human, mouse for BRAT1
		SABiosciences RT² qPCR Primer Assay in human, mouse, rat BRAT1
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BRAT1
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BRAT1

In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRAT1

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for BRAT1 gene from 4/9 species (see all 9) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Brat1⁵ Baat1¹	BRCA1-associated ATM activator 1^{1, 5}	77.67(n)¹ 73.69(a)¹		5 (79.25 cM)⁵ 231841¹ NM_181066.2¹ NP_851411.1¹ 140705011⁵
chicken (Gallus gallus)	Aves	BRAT1¹	BRCA1-associated ATM activator 1	55.84(n) 49.2(a)		769893 XM_001233205.2 XP_001233206.2
lizard (Anolis carolinensis)	Reptilia	BRAT1⁶	BRCA1-associated ATM activator 1	47(a)	1 ↔ 1	GL343340.1(364815-375725)
zebrafish (Danio rerio)	Actinopterygii	brat1¹	BRCA1-associated ATM activator 1	47.01(n) 37.37(a)		678547 NM_001040305.1 NP_001035395.1

ENSEMBL Gene Tree for BRAT1 (if available)
TreeFam Gene Tree for BRAT1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for BRAT1 gene

3 SIMAP similar genes for BRAT1 using alignment to 2 protein entries: BRAT1_HUMAN (see all proteins):

FLJ00053 FLJ00283 FLJ00321

BRAT1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 7 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs147978414^1,2	C	untested¹	2554279(+)	`CCCCAA/C/GGAAGT`	2	L	syn¹		0	--	--	--	--
rs145848308^1,2		--	2550292(+)	`AAACTC/GCTGGC`	1	--	ds500¹		0	--	--	--	--
rs149016184^1,2		--	2550301(+)	`GCCTTA/GAACAA`	1	--	ds500¹		0	--	--	--	--
rs112351257^1,2	C	--	2550327(+)	`CTCCCG/AAAGTG`	1	--	ds500¹		1		CSA	2
rs192655641^1,2		--	2550403(+)	`CCGGGC/TGGAGT`	1	--	ds500¹		0	--	--	--	--
rs183882535^1,2		--	2550529(+)	`AAAAAA/TATTAG`	1	--	ds500¹		0	--	--	--	--
rs189340255^1,2		--	2550570(+)	`AGCTAC/TTCGGG`	1	--	ds500¹		0	--	--	--	--
rs142054344^1,2		--	2550673(+)	`GAAACC/TCCATC`	1	--	ds500¹		0	--	--	--	--
rs181955459^1,2		--	2550699(+)	`ACAGAC/TAGATA`	1	--	ds500¹		0	--	--	--	--
rs185916558^1,2		--	2550798(+)	`TAACTC/GAAAAA`	1	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for BRAT1 (2577444 - 2595392 bp)

Structural Variations
Database of Genomic Variants (DGV) 9 variations for BRAT1: About this table

Variant ID	Type	Subtype	PubMed ID
nsv887298	CNV	Loss	21882294
dgv7117n71	CNV	Loss	21882294
dgv7118n71	CNV	Loss	21882294
nsv887297	CNV	Loss	21882294
nsv830887	CNV	Loss	17160897
dgv7120n71	CNV	Loss	21882294
dgv7116n71	CNV	Loss	21882294
dgv7119n71	CNV	Loss	21882294
nsv823981	CNV	Gain	20364138

Human Gene Mutation Database (HGMD): BRAT1

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BRAT1

DNA2.0 Custom Variant and Variant Library Synthesis for BRAT1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

BRAT1 for disorders About GeneDecksing

OMIM gene information: 614506 OMIM disorders: --

UniProtKB/Swiss-Prot: BRAT1_HUMAN, Q6PJG6

Rigidity and multifocal seizure syndrome, lethal neonatal (RMFSL) [MIM:614498]: A lethal, neonatal, neurologic

disorder characterized by episodic jerking that is apparent in utero, lack of psychomotor development, axial and limb

rigidity, frequent multifocal seizures, and dysautonomia. At birth, affected individuals have small heads, overlapping

cranial sutures, small or absent fontanels, and depressed frontal bones. Infants show poorly responsive focal jerks of

the tongue, face and arms in a nearly continuous sequence throughout life. Note=The disease is caused by mutations

affecting the gene represented in this entry

4 diseases for BRAT1: About MalaCards

ataxia telangiectasia dysautonomia ataxia breast cancer

Export disorders for BRAT1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for BRAT1 gene, integrated from 9 sources (see all 29):
(articles sorted by number of sources associating them with BRAT1)

Utopia: connect your pdf to the dynamic
world of online information

ATM activation by ionizing radiation requires BRCA1-associated BAAT1. (PubMed id 16452482)^{1, 2, 3} Aglipay J.A....Ouchi T. (2006)
Genetic mapping and exome sequencing identify variants associated with five novel diseases. (PubMed id 22279524)^{1, 2} Puffenberger E.G....Strauss K.A. (2012)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)^{1, 2} Beausoleil S.A.... Gygi S.P. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
VCP phosphorylation-dependent interaction partners pre vent apoptosis in Helicobacter pylori-infected gastric epithelial cells. (PubMed id 23383273)¹ Yu C.C....Chow L.P. (2013)
Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)¹ Povlsen L.K....Choudhary C. (2012)
Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)¹ Udeshi N.D....Carr S.A. (2012)
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)¹ Comuzzie A.G....Butte N.F. (2012)
A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)¹ Kristensen A.R....Foster L.J. (2012)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 221927	HGNC: 21701	AceView: C7orf27	Ensembl:ENSG00000106009	euGenes: HUgn221927
ECgene: BRAT1	H-InvDB: BRAT1

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for BRAT1	Pharmacogenomics, SNPs, Pathways

Intellectual Property for BRAT1 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for BRAT1 gene:
Search GeneIP for patents involving BRAT1

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section


	EMD Millipore Custom Antibody & Bulk Services
	EMD Millipore Preclinical / Clinical Development Services
	EMD Millipore Immunoassay Services
	EMD Millipore Target Screening & Profiling Services

	Browse Antibodies		Browse Cell Culture Products
	Browse ELISAs		Browse Flow Cytometry Kits
	Browse Primer Pairs		Browse Kinase Activity Assays/Reagents
	Browse ELISpot Kits/Development Modules		Browse TFB/Immunoprecipitation Assays
	Browse Apoptosis Detection Kits/Reagents		Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents
	Browse DNA Damage/Repair Kits/Reagents		Browse Multiplex/Array Assay Kits/Reagents
	Browse Cell Selection/Detection Kits/Reagents		Browse Secondary Antibodies/Controls/Staining Reagents
	Browse Protease Activity Assays and Reagents		Browse Recombinant/Natural Proteins
	Browse Stem Cell Products		Browse Tocris Biochemicals & Compounds
	Browse cDNA Clones		Browse Proteome Profiler Antibody Arrays

	Browse OriGene Antibodies		OriGene RNAi products in human, mouse, rat for BRAT1
	OriGene qPCR primer pairs and template standards for BRAT1		OriGene Protein Over-expression Lysate for BRAT1
	OriGene MassSpec something-or-other for BRAT1		OriGene clones in human, mouse for BRAT1
	OriGene qSTAR qPCR primer pairs in human, mouse for BRAT1		OriGene Purified Protein for BRAT1
	Browse OriGene ORF clones		OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
	OriGene Custom Antibody Services for BRAT1		OriGene Custom Protein Services for BRAT1

	QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat BRAT1
	QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BRAT1
	QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BRAT1
	QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat BRAT1
	QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BRAT1
	QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BRAT1

	GenScript Custom Purified and Recombinant Proteins Services for BRAT1		GenScript cDNA clones with any tag delivered in your preferred vector for BRAT1
	GenScript Custom Assay Services for BRAT1		GenScript Custom Superior Antibodies Services for BRAT1
	GenScript Custom overexpressing Cell Line Services for BRAT1		CloneReady with Over 120,000 Genes
	Gene Synthesis: Any Gene in Any Vector		Vector-based siRNA and miRNA, Ready for Transfection
	Gene Mutant Library, Variants up to 10^11		Plasmid Preparation
	Custom Peptide Services

Search for Antibodies & Assays

	Search Regulatory tfbs for BRAT1
	Search Chromatin IP Primers for BRAT1
	RT² qPCR Primer Assay in human, mouse, rat BRAT1
	Search GNC Networks for BRAT1
	SABiosciences Custom PCR Arrays for BRAT1

Search Tocris compounds for BRAT1

	Browse Sino Biological Proteins and Antibodies
	Browse Sino Biological Cell Lysates
	Browse Sino Biological cDNA Clones
	4000+ Proteins
	Search Sino Biological for antibodies, proteins & pathways
	Protein Production Services
	Transfection Reagents
	Protein A/G/L resins
	Isotyping reagents

Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

	Novus Tissue Slides
	BRAT1 antibodies
	BRAT1 proteins
	BRAT1 lysates

	Antibodies for BRAT1
	See all of Abcam's Antibodies, Kits and Proteins for BRAT1
	Custom Antibody / Protein Production Service
	Bulk Purchasing
	Advantages of Rabbit Monoclonal antibodies
	Abcam protocols and scientific support

Browse ProSpec Recombinant Proteins

	Proteins for BRAT1
	Antibodies for BRAT1
	ELISAs for BRAT1
	CLIAs for BRAT1

Search LifeMap BioReagents cell lines for BRAT1

	Gene Synthesis
	Protein Engineering
	Variant Library Synthesis
	Codon Optimization
	Protein Production and Purification

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BRAT1

	SwitchGear 3'UTR luciferase reporter plasmids for BRAT1
	SwitchGear Promoter luciferase reporter plasmids for BRAT1

ThermoFisher Antibodies for BRAT1

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BRAT1

	inGenious Targeting Laboratory - Custom generated mouse model solutions for BRAT1
	inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for BRAT1

Customized:

	stable knockdown cell line services for BRAT1
	inducible knockdown cell line services for BRAT1
	design and validation of potent shRNA sequences against BRAT1
	adenovirus for potent knockdown of BRAT1
	stable overexpressing cell line services for BRAT1
	inducible overexpressing cell line services for BRAT1
	adenovirus for overexpression of BRAT1

LSBio Antibodies in human, mouse, rat for BRAT1

GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013

View Random Gene

Category			TGFB1 (GIFtS: 73) transforming growth factor, beta 1
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes BRAT1 gene at Home site.

hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4

Advanced Search

Export list of displayed genes

BRAT1 Gene

BRCA1-Associated ATM Activator 1

Aliases
for BRAT1 gene

Summaries
for BRAT1 gene

Genomic Views
for BRAT1 gene

Proteins
for BRAT1 gene

Protein Domains /
Families
for BRAT1 gene

Function
for BRAT1 gene

Pathways & Interactions
for BRAT1 gene

Drugs & Compounds
for BRAT1 gene

Transcripts
for BRAT1 gene

Expression
for BRAT1 gene

Orthologs
for BRAT1 gene

Paralogs
for BRAT1 gene

Genomic Variants
for BRAT1 gene

Disorders / Diseases
for BRAT1 gene

Publications
for BRAT1 gene

External Searches for BRAT1 gene

Genome Databases showing BRAT1 gene

Other Databases showing BRAT1 gene

Specialized Databases showing BRAT1 gene

Intellectual Property
for BRAT1 gene

Products
for BRAT1 gene

View Random Gene

Advanced Search

Export list of displayed genes

BRAT1 Gene

BRCA1-Associated ATM Activator 1

Aliasesfor BRAT1 gene

Summariesfor BRAT1 gene

Genomic Viewsfor BRAT1 gene

Proteinsfor BRAT1 gene

Protein Domains /Familiesfor BRAT1 gene

Functionfor BRAT1 gene

Pathways & Interactionsfor BRAT1 gene

Drugs & Compoundsfor BRAT1 gene

Transcriptsfor BRAT1 gene

Expression for BRAT1 gene

Orthologsfor BRAT1 gene

Paralogsfor BRAT1 gene

Genomic Variantsfor BRAT1 gene

Disorders / Diseasesfor BRAT1 gene

Publicationsfor BRAT1 gene

External Searches for BRAT1 gene

Genome Databases showing BRAT1 gene

Other Databases showing BRAT1 gene

Specialized Databases showing BRAT1 gene

Intellectual Propertyfor BRAT1 gene

Productsfor BRAT1 gene

View Random Gene

Aliases
for BRAT1 gene

Summaries
for BRAT1 gene

Genomic Views
for BRAT1 gene

Proteins
for BRAT1 gene

Protein Domains /
Families
for BRAT1 gene

Function
for BRAT1 gene

Pathways & Interactions
for BRAT1 gene

Drugs & Compounds
for BRAT1 gene

Transcripts
for BRAT1 gene

Expression
for BRAT1 gene

Orthologs
for BRAT1 gene

Paralogs
for BRAT1 gene

Genomic Variants
for BRAT1 gene

Disorders / Diseases
for BRAT1 gene

Publications
for BRAT1 gene

Intellectual Property
for BRAT1 gene

Products
for BRAT1 gene