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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BPIFB3 Gene

protein-coding   GIFtS: 37
GCID: GC20P031645

BPI Fold Containing Family B, Member 3

(Previous name: chromosome 20 open reading frame 185)
(Previous symbol: C20orf185)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
BPI Fold Containing Family B, Member 31 2     Chromosome 20 Open Reading Frame 1851
C20orf1851 2 3     RYA32
Ligand-Binding Protein RYA32 3     BPI Fold-Containing Family B Member 32
Long Palate, Lung And Nasal Epithelium Carcinoma-Associated Protein 32 3     dJ726C3.42
LPLUNC32 3     Long Palate, Lung And Nasal Epithelium Carcinoma Associated 32

External Ids:    HGNC: 161781   Entrez Gene: 3597102   Ensembl: ENSG000001861907   UniProtKB: P598263   

Export aliases for BPIFB3 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for BPIFB3 Gene: 
BPIFB3 (BPI fold containing family B, member 3) is a protein-coding gene. Diseases associated with BPIFB3 include hepatitis b, and hepatitis. GO annotations related to this gene include lipid binding. An important paralog of this gene is BPIFB4.

UniProtKB/Swiss-Prot: BPIB3_HUMAN, P59826
Function: May have the capacity to recognize and bind specific classes of odorants. May act as a carrier molecule,
transporting odorants across the mucus layer to access receptor sites. May serve as a primary defense mechanism
by recognizing and removing potentially harmful odorants or pathogenic microorganisms from the mucosa or clearing
excess odorant from mucus to enable new odorant stimuli to be received (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000020.10  NC_018931.2  NT_011362.10  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for BPIFB3
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for BPIFB3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BPIFB3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20q11.21   Ensembl cytogenetic band:  20q11.21   HGNC cytogenetic band: 20q11.21

BPIFB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BPIFB3 gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20P031645:  view genomic region     (about GC identifiers)

Start:
31,643,230 bp from pter      End:
31,661,434 bp from pter
Size:
18,205 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: BPIB3_HUMAN, P59826 (See protein sequence)
Recommended Name: BPI fold-containing family B member 3 precursor  
Size: 476 amino acids; 50342 Da
Subcellular location: Secreted (By similarity). Cytoplasm. Note=According to PubMed:12837268, it is cytoplasmic
Secondary accessions: Q5TDX7

Explore the universe of human proteins at neXtProt for BPIFB3: NX_P59826

Explore proteomics data for BPIFB3 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P59826

  • BPIFB3 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    BPIFB3 Protein Expression
    REFSEQ proteins: NP_872599.1  
    ENSEMBL proteins: 
     ENSP00000364643  

    Human Recombinant Protein Products for BPIFB3: 
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    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005737cytoplasm IDA12837268

    BPIFB3 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    BPIF: BPI fold containing

    3 InterPro protein domains:
     IPR017942 Lipid-bd_serum_glycop_N
     IPR017943 Bactericidal_perm-incr_a/b_dom
     IPR001124 Lipid-bd_serum_glycop_C

    Graphical View of Domain Structure for InterPro Entry P59826

    ProtoNet protein and cluster: P59826

    UniProtKB/Swiss-Prot: BPIB3_HUMAN, P59826
    Similarity: Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family


    BPIFB3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: BPIB3_HUMAN, P59826
    Function: May have the capacity to recognize and bind specific classes of odorants. May act as a carrier molecule,
    transporting odorants across the mucus layer to access receptor sites. May serve as a primary defense mechanism
    by recognizing and removing potentially harmful odorants or pathogenic microorganisms from the mucosa or clearing
    excess odorant from mucus to enable new odorant stimuli to be received (By similarity)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008289lipid binding IEA--
         
    BPIFB3 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for BPIFB3:
     Decreased viability with pacli 

         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Bpifb3):
     normal 

    BPIFB3 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Bpifb3tm1Lex for BPIFB3

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BPIFB3

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for BPIFB3 (P598263 ENSP000003646434) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    STAT1P422243, ENSP000003543944I2D: score=2 STRING: ENSP00000354394
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0045087innate immune response NAS11971875

    BPIFB3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for BPIFB3 (BPIB3)

    Search CenterWatch for drugs/clinical trials and news about BPIFB3 / BPIB3

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for BPIFB3 gene: 
    NM_182658.1  

    Unigene Cluster for BPIFB3:

    BPI fold containing family B, member 3
    Hs.472442
    Unigene Representative Sequence: BC113398
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000375494(uc002wym.1)
    miRNA
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    Additional mRNA sequence: 

    AF549189.1 BC113398.1 BC113400.1 

    1 DOTS entry:

    DT.101976619 

    2 AceView cDNA sequences:

    NM_182658 AF549189 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    BPIFB3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCCACCAGCC
    BPIFB3 Expression
    About this image


    See BPIFB3 Protein Expression from SPIRE MOPED and PaxDB
    SOURCE GeneReport for Unigene cluster: Hs.472442

    UniProtKB/Swiss-Prot: BPIB3_HUMAN, P59826
    Tissue specificity: Detected in nasal septal epithelium

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BPIFB3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for BPIFB3 gene from 3/8 species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Bpifb31 , 5 BPI fold containing family B, member 31, 5 81.14(n)1
    78.6(a)1
      2 (75.99 cM)5
    3787001  NM_194357.11  NP_919338.21 
     1539182305 
    chicken
    (Gallus gallus)
    Aves BPIFB36
    Uncharacterized protein
    37(a)
    1 ↔ 1
    20(10656808-10661438)
    lizard
    (Anolis carolinensis)
    Reptilia BPIFB36
    Uncharacterized protein
    30(a)
    1 ↔ 1
    GL343525.1(172348-190706)


    ENSEMBL Gene Tree for BPIFB3 (if available)
    TreeFam Gene Tree for BPIFB3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for BPIFB3 gene
    BPIFB42  BPIFB62  BPIFB22  
    2 SIMAP similar genes for BPIFB3 using alignment to 1 protein entry:     BPIB3_HUMAN:
    C20orf185    BPIFB4

    BPIFB3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/631 SNPs in BPIFB3 are shown (see all 631)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 20 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1867530571,2
    --31641249(+) TCCCTA/GTCTCC 1 -- us2k10--------
    rs1916000151,2
    C--31641289(+) GGTGCC/GGGGGG 1 -- us2k10--------
    rs1278961,2
    C,F,A--31641290(+) GTGCGG/AGGGGA 1 -- us2k1 trp32Minor allele frequency- A:0.12MN NA 304
    rs774618051,2
    C,F--31641291(+) TGCGGG/CGGGAG 1 -- us2k11Minor allele frequency- C:0.10WA 118
    rs1398158821,2
    --31641348(+) CTCCGC/TAGGCC 1 -- us2k10--------
    rs800913821,2
    C,F--31641386(+) GGGTAG/TATTCT 1 -- us2k11Minor allele frequency- T:0.18WA 118
    rs732621401,2
    C,F--31641390(+) AGATTC/ATGTGC 1 -- us2k12Minor allele frequency- A:0.04WA 120
    rs1847992841,2
    --31641418(+) GGGAGC/TCTTGG 1 -- us2k10--------
    rs739044421,2
    C,F--31641434(+) GCCCAA/GTAGGT 1 -- us2k12Minor allele frequency- G:0.06WA 120
    rs1499227811,2
    --31641435(+) CCCAAC/TAGGTG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for BPIFB3 (31643230 - 31661434 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for BPIFB3:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2668356CNV Deletion23128226
    dgv4563n71CNV Loss21882294
    nsv3352CNV Loss18451855
    essv2996CNV CNV17122850
    dgv1325e1CNV Complex17122850

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    2 diseases for BPIFB3:    About MalaCards
    hepatitis b    hepatitis


    BPIFB3 for disorders           About GeneDecksing


    Export disorders for BPIFB3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for BPIFB3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with BPIFB3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. PLUNC: a novel family of candidate host defence proteins expressed in the upper airways and nasopharynx. (PubMed id 11971875)1, 2, 3 Bingle C.D. and Craven C.J. (2002)
    2. Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a subfamily of the BPI fold-containing superfamily. (PubMed id 21787333)1, 3 Bingle C.D....Craven C.J. (2011)
    3. Expansion of the BPI family by duplication on human chromosome 20: characterization of the RY gene cluster in 20q11.21 encoding olfactory transporters/antimicrobial-like peptides. (PubMed id 12837268)1, 2 Andrault J.-B.... Rouquier S. (2003)
    4. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
    5. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (2010)
    6. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)1 Ewing R.M.... Figeys D. (2007)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 359710 HGNC: 16178 AceView: C20orf185 Ensembl:ENSG00000186190 euGenes: HUgn359710
    ECgene: BPIFB3 H-InvDB: BPIFB3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for BPIFB3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for BPIFB3 gene:
    Search GeneIP for patents involving BPIFB3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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