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Aliases for BORCS8 Gene

Aliases for BORCS8 Gene

  • BLOC-1 Related Complex Subunit 8 2 3 5
  • MEF2B Neighbor Gene Protein 3 4
  • MEF2BNB 3 4
  • MEF2B Neighbor 2

External Ids for BORCS8 Gene

Previous HGNC Symbols for BORCS8 Gene

  • MEF2BNB

Summaries for BORCS8 Gene

GeneCards Summary for BORCS8 Gene

BORCS8 (BLOC-1 Related Complex Subunit 8) is a Protein Coding gene. Among its related pathways are AMPK signaling pathway.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BORCS8 Gene

Genomics for BORCS8 Gene

Regulatory Elements for BORCS8 Gene

Enhancers for BORCS8 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around BORCS8 on UCSC Golden Path with GeneCards custom track

Promoters for BORCS8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BORCS8 on UCSC Golden Path with GeneCards custom track

Genomic Location for BORCS8 Gene

Chromosome:
19
Start:
19,176,903 bp from pter
End:
19,192,591 bp from pter
Size:
15,689 bases
Orientation:
Minus strand

Genomic View for BORCS8 Gene

Genes around BORCS8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BORCS8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BORCS8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BORCS8 Gene

Proteins for BORCS8 Gene

  • Protein details for BORCS8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96FH0-MF2NB_HUMAN
    Recommended name:
    Protein MEF2BNB
    Protein Accession:
    Q96FH0
    Secondary Accessions:
    • B2RXF9
    • Q9BT01

    Protein attributes for BORCS8 Gene

    Size:
    119 amino acids
    Molecular mass:
    13403 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BORCS8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BORCS8 Gene

Proteomics data for BORCS8 Gene at MOPED

Post-translational modifications for BORCS8 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BORCS8 Gene

No data available for DME Specific Peptides for BORCS8 Gene

Domains & Families for BORCS8 Gene

Gene Families for BORCS8 Gene

Protein Domains for BORCS8 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BORCS8 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96FH0

UniProtKB/Swiss-Prot:

MF2NB_HUMAN :
  • Belongs to the MEF2BNB family.
Family:
  • Belongs to the MEF2BNB family.
genes like me logo Genes that share domains with BORCS8: view

Function for BORCS8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BORCS8 Gene

Localization for BORCS8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BORCS8 Gene

Pathways & Interactions for BORCS8 Gene

SuperPathways for BORCS8 Gene

Superpath Contained pathways
1 AMPK signaling pathway
genes like me logo Genes that share pathways with BORCS8: view

Pathways by source for BORCS8 Gene

1 BioSystems pathway for BORCS8 Gene

Interacting Proteins for BORCS8 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000425864%0d%0a9606.ENSP00000340995%0d%0a
Selected Interacting proteins: Q96FH0-MF2NB_HUMAN ENSP00000425864 for BORCS8 Gene via UniProtKB I2D STRING

Gene Ontology (GO) - Biological Process for BORCS8 Gene

None

No data available for SIGNOR curated interactions for BORCS8 Gene

Drugs & Compounds for BORCS8 Gene

No Compound Related Data Available

Transcripts for BORCS8 Gene

mRNA/cDNA for BORCS8 Gene

(2) REFSEQ mRNAs :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BORCS8 Gene

No ASD Table

Relevant External Links for BORCS8 Gene

GeneLoc Exon Structure for
BORCS8
ECgene alternative splicing isoforms for
BORCS8

Expression for BORCS8 Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for BORCS8 Gene

Orthologs for BORCS8 Gene

This gene was present in the common ancestor of animals.

Orthologs for BORCS8 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 2310045N01Rik 35
  • 87.65 (n)
  • 98.15 (a)
Borcs8 16
chimpanzee
(Pan troglodytes)
Mammalia MEF2BNB 35
  • 99.69 (n)
  • 100 (a)
MEF2BNB 36
  • 75 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 76 (a)
OneToMany
MEF2BNB 36
  • 98 (a)
OneToMany
MEF2BNB 35
  • 90.76 (n)
  • 98.32 (a)
oppossum
(Monodelphis domestica)
Mammalia MEF2BNB 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MEF2BNB 35
  • 89.92 (n)
  • 98.32 (a)
MEF2BNB 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mef2bnb 35
  • 86.42 (n)
  • 97.22 (a)
chicken
(Gallus gallus)
Aves MEF2BNB 35
  • 81.13 (n)
  • 83.02 (a)
MEF2BNB 36
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mef2bnb 35
  • 71.52 (n)
  • 80.58 (a)
zebrafish
(Danio rerio)
Actinopterygii mef2bnb 35
  • 66.98 (n)
  • 75.47 (a)
mef2bnb 36
  • 66 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008600 35
  • 53.47 (n)
  • 38.61 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG32590 35
  • 49.14 (n)
  • 28.87 (a)
CG32590 36
  • 16 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea K11B4.2 36
  • 21 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 27 (a)
OneToOne
Species with no ortholog for BORCS8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BORCS8 Gene

ENSEMBL:
Gene Tree for BORCS8 (if available)
TreeFam:
Gene Tree for BORCS8 (if available)

Paralogs for BORCS8 Gene

Pseudogenes.org Pseudogenes for BORCS8 Gene

genes like me logo Genes that share paralogs with BORCS8: view

No data available for Paralogs for BORCS8 Gene

Variants for BORCS8 Gene

Variation tolerance for BORCS8 Gene

Gene Damage Index Score: 3.10; 51.06% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BORCS8 Gene

HapMap Linkage Disequilibrium report
BORCS8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for BORCS8 Gene

Disorders for BORCS8 Gene

Relevant External Links for BORCS8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BORCS8
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BORCS8

No disorders were found for BORCS8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BORCS8 Gene

Publications for BORCS8 Gene

  1. BORC, a multisubunit complex that regulates lysosome positioning. (PMID: 25898167) Pu J. … Bonifacino J.S. (Dev. Cell 2015) 2 3 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3

Products for BORCS8 Gene

Sources for BORCS8 Gene

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